Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20tropicalis_20[genbank_20GCA_5F000186765.1_202011- 01-31] 665 sequences; 79,321,433 total letters Query= NC_030936.1 Length=93843 Score E Sequences producing significant alignments: (Bits) Value seq243 122 5e-23 >seq243 Length=1117 Score = 122 bits (134), Expect = 5e-23 Identities = 148/199 (74%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 72432 CGAGTGGAAGGACGCCGAGGCGCTCTTCCTGCGCTGCAACATCTGGCGCGAGCCGGCCGA 72491 ||| ||| ||||| ||||||||| ||||| ||||| | || ||||| || || Sbjct 439 CGACTGGTCGGACGGCGAGGCGCTGTTCCTCGGCTGCCGCGCCTTCGGCGAGTACGCGGA 380 Query 72492 GAACGTCGCCGAGTCGCTGACCAAGGGCATGCGCGTCATCGTCCAGGGACGCCTCAAGCA 72551 ||| |||||| |||||| |||||||||| ||| || ||||||||||| || |||| || Sbjct 379 CAACATCGCCGCGTCGCTCACCAAGGGCACGCGAGTGATCGTCCAGGGCCGTCTCACCCA 320 Query 72552 GCGCAGCTAC-GAGACGAAGGAAGGCGAGAACCGGACGGTCATCGAGCTCGAGGTCGAGG 72610 |||||||||| ||| || | || || | || || |||| ||||||||||| | Sbjct 319 GCGCAGCTACACCGAC-AACCAGGGGCAGCAGCGCACCTCGCTCGACCTCGAGGTCGAAG 261 Query 72611 AGATCGGCCCCGCGCTGCG 72629 || |||||||| |||| || Sbjct 260 AGGTCGGCCCCACGCTCCG 242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 300170367193260