Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20tropicalis_20[genbank_20GCA_5F000186765.1_202011- 01-31] 665 sequences; 79,321,433 total letters Query= NC_031029.1 Length=93686 Score E Sequences producing significant alignments: (Bits) Value seq243 122 5e-23 >seq243 Length=1117 Score = 122 bits (134), Expect = 5e-23 Identities = 221/318 (69%), Gaps = 4/318 (1%) Strand=Plus/Minus Query 72627 TGATCACCGTGATCGGAAACCTGACCGCCGATCCCGAACTGCGCTTCACCCCCTCGGGTG 72686 |||||||||| |||| |||||| ||||| ||||||| |||| ||| || | ||| Sbjct 557 TGATCACCGTCGTCGGGAACCTGGTTGCCGACCCCGAACCGCGCGTCAGCCAGGCCGGTA 498 Query 72687 CGCCGGTCGCCAACTTCACCGTCGCAAGCACCCCGCG-GTACTTCGACAAGCAGTCCAAC 72745 | | | | ||| |||| || ||||| || | |||| ||||| | Sbjct 497 AGTCCTGGGTGACGTTCCGGATCGCCTCGACGCCGCGCGTGCG-CGACCGTCAGTCGGGC 439 Query 72746 GAGTGGAAGGACGCCGAGGCGCTCTTCCTGCGCTGCAACATCTGGCGCGAGCCGGCCGAG 72805 || ||| ||||| ||||||||| ||||| ||||| | || ||||| || || Sbjct 438 GACTGGTCGGACGGCGAGGCGCTGTTCCTCGGCTGCCGCGCCTTCGGCGAGTACGCGGAC 379 Query 72806 AACGTCACCGAGTCGCTGTCCAAGGGCATGCGCGTCATCGTCCAGGGTCGCCTCAAGCAG 72865 ||| || ||| |||||| ||||||||| ||| || ||||||||||| || |||| ||| Sbjct 378 AACATCGCCGCGTCGCTCACCAAGGGCACGCGAGTGATCGTCCAGGGCCGTCTCACCCAG 319 Query 72866 CGCAGCTAC-GAGACGAAGGAAGGCGAGAACCGGACGGTCATCGAGCTCGAGGTCGAGGA 72924 ||||||||| ||| || | || || | || || |||| ||||||||||| || Sbjct 318 CGCAGCTACACCGAC-AACCAGGGGCAGCAGCGCACCTCGCTCGACCTCGAGGTCGAAGA 260 Query 72925 GATCGGCCCCGCGCTGCG 72942 | |||||||| |||| || Sbjct 259 GGTCGGCCCCACGCTCCG 242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 299667971265055