Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20tropicalis_20[genbank_20GCA_5F000186765.1_202011- 01-31] 665 sequences; 79,321,433 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq626 188 1e-42 >seq626 Length=20921866 Score = 188 bits (208), Expect = 1e-42 Identities = 474/718 (66%), Gaps = 2/718 (0%) Strand=Plus/Minus Query 77924 TTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGA 77983 |||||| || |||||||| || || | ||| ||||| || ||||||||||| || Sbjct 6579878 TTCAAACTCTTCTCCCCAGCAGTCGTCGAGTCCTGGGCACTCGCATGGGCACATCAGCGA 6579819 Query 77984 CCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAA 78043 ||| || ||||| || || || ||||| ||||| || || | ||| ||||| | || Sbjct 6579818 CCAATCCTGATCTTTCTCGACGCGCTTCATGAAGAGGTCCGGCACCCAGAGAGCCAGGAA 6579759 Query 78044 TAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCAT 78103 ||||| || | | | ||||| || || ||||| |||| ||| ||||| | Sbjct 6579758 CAGATCACGAGCACGCTCCTCTTCTGGACCGGTGTTCTTGCGAAGAGCGACGAACTCGAA 6579699 Query 78104 AATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCC 78163 | ||| | |||||||| || || || || || | | |||| || || || || ||||| Sbjct 6579698 GACATCGGCGTGCCATGGCTCAAGGTAGATGGCGAAAGCTCCTGGGCGCTTGTTTCCTCC 6579639 Query 78164 CTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGA 78223 |||||| | ||| | || ||||| || || || | | ||| || || | || || || Sbjct 6579638 CTGATCAACATAACGAGCTGTGTTGTTGTAGACACGAAGCATCGGGATGAGCCCATTGGA 6579579 Query 78224 TGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGATATCCC 78283 |||||||| ||||| | ||| | ||| | |||||||| || | | | || Sbjct 6579578 AGTTCCATTGGTTCCGGCAATGACAGATCCTGTAGCGCGAATCTTGTGGACGTTGAGTCC 6579519 Query 78284 TATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTC 78343 |||||||| || |||| || || ||||| || | ||||| ||||||||||| || Sbjct 6579518 AATTCCTCCGGCACTCTTCGAGATGAGAGCACACTGCTTCAAGGTATCGTAGATTCCGAG 6579459 Query 78344 TATACTGTCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCC 78403 || || || |||| | || || || || ||||| || | || ||||| Sbjct 6579458 AATCGAATCCTCGCTCATTGTGAGCAGGAAGCACGACGACATCTGTGGGCGACATGTTCC 6579399 Query 78404 TGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGT 78463 | || || | || || || |||||||| | || || || | |||||||| || Sbjct 6579398 AGAGTTGAAGAGAGTTGGGGAAGCATGCGTCATGTATCGCTCCGACATCAGATTGTACGT 6579339 Query 78464 TTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAACATATG 78523 || || || | || |||| | | ||||| || | || |||||||||||||| || Sbjct 6579338 CTCGATGGCAGCTTGAATGTTCTCTCCGTGAATACCGATGGCGACACGCATCAACATCTG 6579279 Query 78524 CTGAGGTCTTTCAACCGTCTT-ATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTT 78582 || || | |||| || ||| || || || |||| | || || || | ||| | Sbjct 6579278 TTGTGGCCGCTCAA-CGACTTCTTTGTTGATCTTCAGAAGATACGAACGCTCAAGAGTCT 6579220 Query 78583 TAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAATAACAGAATTTAGTTT 78640 | || || || || |||| ||| |||| | || |||| || |||| || || || Sbjct 6579219 TGAATCCGAAGTAAGTGTAGGAATAGTCACGATCATAAACGATGGCAGAGTTCAGCTT 6579162 Score = 118 bits (130), Expect = 1e-21 Identities = 281/422 (67%), Gaps = 7/422 (2%) Strand=Plus/Plus Query 76806 GGTTTTGTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGC 76865 || || ||||| | |||||||| ||||| || || ||| |||||||||| || ||| Sbjct 6580815 GGCTTCGTACGCAAGTAGTACATTCCAGTCTTGAGTCCCTTCTTCCATCCGTAAAAGTGC 6580874 Query 76866 ATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATATTCATCGACTGACTTTGA 76925 || ||| | || || || || | ||| ||||| || || | || ||| |||| Sbjct 6580875 ATTGATGTGATACCGGCGTAGCTCGGCTTGGCCATATGGATGTTGAGTGATTGAGATTGA 6580934 Query 76926 TCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAA 76985 |||||||| || || | |||||| ||||| | || || ||||| | || ||||| Sbjct 6580935 TCGATGAATGCACCACGATCAGCAGCCATCTCGATGATCTCTTTTTGTGATATCTCCCAC 6580994 Query 76986 ATAGTTTTGAAAACTTGTTTGATATCATCTGGAA---GGTTTGTATTTTGAATGGAACCA 77042 | ||| | | | || |||||||||||||| | | | || ||||| || ||| Sbjct 6580995 ACAGTGCGGTACAGTTCCTTGATATCATCTGGGATTCCGGCGATGTTCTGAATTGATCCA 6581054 Query 77043 CCATCTGATATAATTGTATTCTTTATATCATCATTCCACAATTTCCTCTCTGTTAAAACT 77102 | | || | | |||||| || ||||| ||||||| |||||| | || | Sbjct 6581055 TTGTTGGCAATCAATCGATTCTTCATCTCATCGCTCCACAA--TCCTCTTTCAACCAAGT 6581112 Query 77103 C--TAAGGAGATGAGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAA 77160 | | || | || ||||| || || || || || || || | || | |||| ||| | Sbjct 6581113 CCTTCAGCATGTGTGGATTGACAATCTGGAAGTCACCGGAGAGAACACGTCGAGAGTAGA 6581172 Query 77161 TATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAG 77220 | || || ||||| || | || || |||||||| | |||||||||||| || || | Sbjct 6581173 TGTTCGATGTGTATGGCTCAATCGACTCGTTGTTTCCGAGAATTTGAGCAGTGGAGGCCG 6581232 Query 77221 TT 77222 || Sbjct 6581233 TT 6581234 Score = 91.5 bits (100), Expect = 2e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 76803 GCGGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAA 76862 || || || ||||| | |||||||| ||||| || || ||| |||||||||| || Sbjct 6571271 GCTGGCTTCGTACGCAAGTAGTACATTCCAGTCTTGAGTCCCTTCTTCCATCCGTAAAAG 6571330 Query 76863 TGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATATTCATCGACTGACTT 76922 ||||| ||| | || || || || | ||| ||||| || || | || ||| | Sbjct 6571331 TGCATTGATGTGATACCGGCGTAGCTCGGCTTGGCCATATGGATGTTGAGTGATTGAGAT 6571390 Query 76923 TGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCC 76982 ||||||||||| || || | |||||| ||||| | || || ||| || | || ||| Sbjct 6571391 TGATCGATGAATGCACCACGATCAGCAGCCATCTCGATGATCTCCTTCTGTGATATCTCC 6571450 Query 76983 CAAATAGTTTTGAAAACTTGTTTGATATCATCTGG 77017 || | ||| | | | || |||||||||||||| Sbjct 6571451 CACACAGTGCGGTACAGTTCCTTGATATCATCTGG 6571485 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 47852 TTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTC 47911 ||||||||| |||||||||||||| || || || || || || | || || || || Sbjct 3165398 TTGATATTCGGAGACACGTTTCTCGAAGAAGTTGGTCTTTCCGTCGATCGAAATGTTCTC 3165339 Query 47912 CATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAATTCTGAAATCAG 47971 ||| || |||||||| || | || || | ||| | | |||| | ||| | || Sbjct 3165338 CATGAAGTCAAATGGGTTCTTGACTTTGTACAGTTTGTCACATCCGAGCTCTTGGAGCAA 3165279 Query 47972 TCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAAGTTT 48031 ||| || || || || || ||| ||||| |||||||||||| || | | Sbjct 3165278 ATGATCGGCGACAAACTCAATGTATTGGGACATCAGACGACAATTCATTCCGATCATATC 3165219 Query 48032 AACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATC 48079 ||||| |||||||| || || || |||||||| || ||||| || || Sbjct 3165218 GACTGGAAGAGCCTCTGTGAGGAATTCTTGTTCAATGGTGACGGCGTC 3165171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694663025565600