Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20tropicalis_20[genbank_20GCA_5F000186765.1_202011- 01-31] 665 sequences; 79,321,433 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq626 141 1e-28 seq625 87.8 3e-12 >seq626 Length=20921866 Score = 141 bits (156), Expect = 1e-28 Identities = 455/702 (65%), Gaps = 8/702 (1%) Strand=Plus/Minus Query 76519 TTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGA 76578 |||||| || |||||||| || || | || || || || || ||||||| || Sbjct 6579878 TTCAAACTCTTCTCCCCAGCAGTCGTCGAGTCCTGGGCACTCGCATGGGCACATCAGCGA 6579819 Query 76579 CCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAA 76638 ||| || ||||| || || || ||||| ||||| || || | ||| ||||| | || Sbjct 6579818 CCAATCCTGATCTTTCTCGACGCGCTTCATGAAGAGGTCCGGCACCCAGAGAGCCAGGAA 6579759 Query 76639 TAGATCTCGGGTTCTACGTTCTTCATTT---CCTGTATTCTTTTTAAGATCTAGGAACTC 76695 ||||| || | ||| || || | | || || ||||| |||| | | |||||| Sbjct 6579758 CAGATCACGAGC---ACGCTCCTCTTCTGGACCGGTGTTCTTGCGAAGAGCGACGAACTC 6579702 Query 76696 CATAATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACC 76755 | | ||| | |||||||| || || || || || | | | || || || || || || Sbjct 6579701 GAAGACATCGGCGTGCCATGGCTCAAGGTAGATGGCGAAAGCTCCTGGGCGCTTGTTTCC 6579642 Query 76756 TCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTT 76815 ||||||||| | ||| | || ||||| || || || | | ||| || || | || || Sbjct 6579641 TCCCTGATCAACATAACGAGCTGTGTTGTTGTAGACACGAAGCATCGGGATGAGCCCATT 6579582 Query 76816 AGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGATAG 76875 || || ||||| ||||| | ||| | ||| || ||||| || | || Sbjct 6579581 GGAAGTTCCATTGGTTCCGGCAATGACAGATCCTGTAGCGCGAATCTTGTGGACGTTGAG 6579522 Query 76876 GCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCC 76935 || |||||||| || | || ||||| |||||||| | ||||| || || ||||| || Sbjct 6579521 TCCAATTCCTCCGGCACTCTTCGAGATGAGAGCACACTGCTTCAAGGTATCGTAGATTCC 6579462 Query 76936 CTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGT 76995 || ||| || |||| | || || || || ||||| || | || || Sbjct 6579461 GAGAATCGAATCCTCGCTCATTGTGAGCAGGAAGCACGACGACATCTGTGGGCGACATGT 6579402 Query 76996 TCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTA 77055 ||| | || || | || || || ||||| || | || || || | |||||||| Sbjct 6579401 TCCAGAGTTGAAGAGAGTTGGGGAAGCATGCGTCATGTATCGCTCCGACATCAGATTGTA 6579342 Query 77056 TGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAACAT 77115 || || || | |||| || | | | ||||| || | ||||||||||||||||| Sbjct 6579341 CGTCTCGATGGCAGCTTGAATGTTCTCTCCGTGAATACCGATGGCGACACGCATCAACAT 6579282 Query 77116 ATGCTGAGGTCGTTCTACAGTCTT-ATTATTTATTTTCAACAAGTATGATTTTTCCAAAG 77174 || || || || || || | ||| || || || |||| | || || || | || Sbjct 6579281 CTGTTGTGGCCGCTCAAC-GACTTCTTTGTTGATCTTCAGAAGATACGAACGCTCAAGAG 6579223 Query 77175 TTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAA 77216 | || || || || || |||| ||| |||| | || |||| Sbjct 6579222 TCTTGAATCCGAAGTAAGTGTAGGAATAGTCACGATCATAAA 6579181 Score = 141 bits (156), Expect = 1e-28 Identities = 285/422 (68%), Gaps = 7/422 (2%) Strand=Plus/Plus Query 75400 TGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATG 75459 ||| || ||||| | |||||||| ||||| || || ||| |||||||||| || || Sbjct 6580814 TGGCTTCGTACGCAAGTAGTACATTCCAGTCTTGAGTCCCTTCTTCCATCCGTAAAAGTG 6580873 Query 75460 CATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATATTCATCGACTGACTTTG 75519 ||| ||| | || || ||||| | ||| ||||| || || | || ||| ||| Sbjct 6580874 CATTGATGTGATACCGGCGTAGCTCGGCTTGGCCATATGGATGTTGAGTGATTGAGATTG 6580933 Query 75520 ATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCA 75579 ||||||||| || || | |||||| ||||| | || || ||||| | || ||||| Sbjct 6580934 ATCGATGAATGCACCACGATCAGCAGCCATCTCGATGATCTCTTTTTGTGATATCTCCCA 6580993 Query 75580 AATAGTTTTGAAAACTTGTTTGATATCATCTGGAAGATT-----TGTATTTTGAATGGAT 75634 | ||| | | | || |||||||||||||| |||| | || ||||| ||| Sbjct 6580994 CACAGTGCGGTACAGTTCCTTGATATCATCTGG--GATTCCGGCGATGTTCTGAATTGAT 6581051 Query 75635 CCGCCATCAGATATAATTGTATTCTTGATCTCATCATTCCACAATTTTCTCTCGGTTAAA 75694 || | | || | | |||||| |||||||| |||||||| ||| || || Sbjct 6581052 CCATTGTTGGCAATCAATCGATTCTTCATCTCATCGCTCCACAATCCTCTTTCAACCAAG 6581111 Query 75695 ACTCTAAGGAGATGAGGATTAACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAA 75754 | | || | || ||||| ||||| || || || || || | || | ||||| ||| Sbjct 6581112 TCCTTCAGCATGTGTGGATTGACAATCTGGAAGTCACCGGAGAGAACACGTCGAGAGTAG 6581171 Query 75755 ATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCA 75814 || || || ||||| || | || || |||||||| | |||||||||||| || || Sbjct 6581172 ATGTTCGATGTGTATGGCTCAATCGACTCGTTGTTTCCGAGAATTTGAGCAGTGGAGGCC 6581231 Query 75815 GT 75816 || Sbjct 6581232 GT 6581233 Score = 100 bits (110), Expect = 4e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 75398 GCTGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAA 75457 ||||| || ||||| | |||||||| ||||| || || ||| |||||||||| || Sbjct 6571271 GCTGGCTTCGTACGCAAGTAGTACATTCCAGTCTTGAGTCCCTTCTTCCATCCGTAAAAG 6571330 Query 75458 TGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATATTCATCGACTGACTT 75517 ||||| ||| | || || ||||| | ||| ||||| || || | || ||| | Sbjct 6571331 TGCATTGATGTGATACCGGCGTAGCTCGGCTTGGCCATATGGATGTTGAGTGATTGAGAT 6571390 Query 75518 TGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCC 75577 ||||||||||| || || | |||||| ||||| | || || ||| || | || ||| Sbjct 6571391 TGATCGATGAATGCACCACGATCAGCAGCCATCTCGATGATCTCCTTCTGTGATATCTCC 6571450 Query 75578 CAAATAGTTTTGAAAACTTGTTTGATATCATCTGG 75612 || | ||| | | | || |||||||||||||| Sbjct 6571451 CACACAGTGCGGTACAGTTCCTTGATATCATCTGG 6571485 Score = 87.8 bits (96), Expect = 3e-12 Identities = 167/246 (68%), Gaps = 0/246 (0%) Strand=Plus/Minus Query 46323 TGACATAACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCC 46382 |||||| ||||| ||| ||||| |||||||||||||| || || || || || Sbjct 3165416 TGACATTACTCCTGGACGTTGATATTCGGAGACACGTTTCTCGAAGAAGTTGGTCTTTCC 3165357 Query 46383 TTCCAATGATATATTTTCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAA 46442 || | || || || ||||| || ||||| || || | || || || | ||| | | | Sbjct 3165356 GTCGATCGAAATGTTCTCCATGAAGTCAAATGGGTTCTTGACTTTGTACAGTTTGTCACA 3165297 Query 46443 TCCTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACA 46502 ||| | ||| | || ||| || || || || || || ||||| ||| Sbjct 3165296 TCCGAGCTCTTGGAGCAAATGATCGGCGACAAACTCAATGTATTGGGACATCAGACGACA 3165237 Query 46503 ATTCATTCCTATGAGTTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGAC 46562 ||||||||| || | | ||| || |||||||| || || || ||||||||||| ||||| Sbjct 3165236 ATTCATTCCGATCATATCGACTGGAAGAGCCTCTGTGAGGAATTCTTGTTCAATGGTGAC 3165177 Query 46563 AGCATC 46568 || || Sbjct 3165176 GGCGTC 3165171 Score = 87.8 bits (96), Expect = 3e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 77347 tttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATTGCATAGTC 77406 ||| || || | |||||| | || || ||||| ||||||||||| |||| ||||| || Sbjct 6572527 TTTGTTCGTCTTCTTGTGCAAGTTGGAAACGGCGATTCTAGCAGCAAGAAGAGCATATTC 6572586 Query 77407 AGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTAATTCTATAGT 77466 ||||||||||| || | ||| ||| | || || || || | || | ||| | ||| Sbjct 6572587 CGGATGTTGTGTTGTCATCGAGGCGGCTGTCTCAGCTGCCAAGTTGTCCAGTTCGACAGT 6572646 Query 77467 AGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGGCTATTTTGATAGGATCTACAAA 77526 || ||||| || || | || ||||| || || || | || ||||| || || Sbjct 6572647 TGTCACTCCTTTGTACAAACCGCTGATAACCTTGATAGCGACAGCGACTGGATCGACGAA 6572706 Query 77527 CTCGGTGTTCAAACCATA 77544 ||| |||||||||| || Sbjct 6572707 CTCCATGTTCAAACCGTA 6572724 Score = 87.8 bits (96), Expect = 3e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 77347 tttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATTGCATAGTC 77406 ||| || || | |||||| | || || ||||| ||||||||||| |||| ||||| || Sbjct 6585260 TTTGTTCGTCTTCTTGTGCAAGTTGGAAACGGCGATTCTAGCAGCAAGAAGAGCATATTC 6585201 Query 77407 AGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTAATTCTATAGT 77466 ||||||||||| || | ||| ||| | || || || || | || | ||| | ||| Sbjct 6585200 CGGATGTTGTGTTGTCATCGAGGCGGCTGTCTCAGCTGCCAAGTTGTCCAGTTCGACAGT 6585141 Query 77467 AGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGGCTATTTTGATAGGATCTACAAA 77526 || ||||| || || | || ||||| || || || | || ||||| || || Sbjct 6585140 TGTCACTCCTTTGTACAAACCGCTGATAACCTTGATAGCGACAGCGACTGGATCGACGAA 6585081 Query 77527 CTCGGTGTTCAAACCATA 77544 ||| |||||||||| || Sbjct 6585080 CTCCATGTTCAAACCGTA 6585063 >seq625 Length=33334924 Score = 87.8 bits (96), Expect = 3e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 77347 tttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATTGCATAGTC 77406 ||| || || | |||||| | || || ||||| ||||||||||| |||| ||||| || Sbjct 23251377 TTTGTTCGTCTTCTTGTGCAAGTTGGAAACGGCGATTCTAGCAGCAAGAAGAGCATATTC 23251436 Query 77407 AGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTAATTCTATAGT 77466 ||||||||||| || | ||| ||| | || || || || | || | ||| | ||| Sbjct 23251437 CGGATGTTGTGTTGTCATCGAGGCGGCTGTCTCAGCTGCCAAGTTGTCCAGTTCGACAGT 23251496 Query 77467 AGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGGCTATTTTGATAGGATCTACAAA 77526 || ||||| || || | || ||||| || || || | || ||||| || || Sbjct 23251497 TGTCACTCCTTTGTACAAACCGCTGATAACCTTGATAGCGACAGCGACTGGATCGACGAA 23251556 Query 77527 CTCGGTGTTCAAACCATA 77544 ||| |||||||||| || Sbjct 23251557 CTCCATGTTCAAACCGTA 23251574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712928473732800