Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20tropicalis_20[genbank_20GCA_5F000186765.1_202011- 01-31] 665 sequences; 79,321,433 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq625 141 2e-28 seq542 140 7e-28 seq549 125 2e-23 >seq625 Length=33334924 Score = 141 bits (156), Expect = 2e-28 Identities = 165/221 (75%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||| || | || ||||| ||||| |||||||||||||| |||| | ||| | Sbjct 31079078 GAGACGGAGAACCAAGTGGAGAGTCGACTCCTTTTGGATGTTGTAGTCGGAGAGAGTACG 31079019 Query 151946 CCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 ||||| || || ||||| ||||||||||| || || ||||| || | | |||||| Sbjct 31079018 TCCATCCTCGAGTTGCTTT--CCGGCGAAGATCAGTCTTTGCTGATCTGGTGGAATTCCT 31078961 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 ||||| ||||| || || |||||| |||| | | | || || ||| ||||| || Sbjct 31078960 TCCTTGTCTTGGATCTTAGCCTTGACATTCTCGATGGTATCGGAGGCCTCGACTTCGAGG 31078901 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||||||| || ||||| |||||||| ||||||| ||||| Sbjct 31078900 GTAATAGTCTTACCCGTCAGAGTCTTGACGAAGATTTGCAT 31078860 >seq542 Length=114868 Score = 140 bits (154), Expect = 7e-28 Identities = 161/215 (75%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || ||||| ||||| ||||| || ||||| ||||| || | | |||||| || || Sbjct 76697 AGAACGAGATGGAGAGTGGACTCCTTCTGGATATTGTAGTCAGAGAGAGTTCTTCCGTCC 76756 Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || || ||||| |||||||||||||| ||||||||||| | | |||||| ||||| | Sbjct 76757 TCAAGCTGCTTT--CCGGCGAAGATAAGTCTCTGCTGGTCTGGTGGGATTCCCTCCTTGT 76814 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070 |||| || || ||||| |||| | | | || ||| || || ||||| || || | Sbjct 76815 CTTGGATCTTGGCCTTGACGTTCTCAATGGTATCAGAAGCTTCAACCTCAAGGGTGATGG 76874 Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 | || || ||||| ||||| ||||||| ||||||| Sbjct 76875 TCTTTCCTGTGAGGGTCTTGACGAAGATCTGCATT 76909 Score = 132 bits (146), Expect = 1e-25 Identities = 159/214 (74%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || ||||| ||||| ||||| || ||||| ||||| || | | |||||| |||||| Sbjct 77428 AGAACGAGATGGAGAGTGGACTCCTTCTGGATATTGTAGTCAGAGAGAGTTCTTCCATCT 77487 Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || || ||||| ||||||||||| || ||||||||||| | | |||||||||||| | Sbjct 77488 TCGAGCTGCTTT--CCGGCGAAGATGAGTCTCTGCTGGTCTGGTGGGATTCCTTCCTTGT 77545 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070 |||| || || |||||| | || | | | || ||| ||| || || || || || | Sbjct 77546 CTTGGATCTTGGCCTTGACATTTTCGATGGTATCAGAAGCCTCCACCTCCAGGGTGATGG 77605 Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||| || || | || || ||||||| ||||| Sbjct 77606 TTTTTCCAGTCAACGTTTTGACGAAGATTTGCAT 77639 Score = 131 bits (144), Expect = 4e-25 Identities = 166/225 (74%), Gaps = 5/225 (2%) Strand=Plus/Plus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTC-TTTTTGGATGTTGTAATCGGCTAAAGT 151942 ||||| | ||| || | |||||||| || || ||||||||||||||| |||| ||||| Sbjct 76916 CTGAGACGGAGAACCAAGTGAAGAGTGGATTCCTTTTTGGATGTTGTAGTCGGACAAAGT 76975 Query 151943 TCTCCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATT 152000 | ||||| || || ||||| ||||||||||| | || ||||| || | | |||| Sbjct 76976 GCGACCATCCTCAAGCTGCTTT--CCGGCGAAGATCAATCTTTGCTGATCTGGTGGGATT 77033 Query 152001 CCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCA 152060 |||||||| |||||||| || ||||| |||| | | |||| ||| ||| ||||| Sbjct 77034 CCTTCCTTGTCTTGAATCTTGGCCTTGACGTTCTCAATGGTGTCGGAAGCCTCGACTTCC 77093 Query 152061 AGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 | || || || || || || || || || || |||| ||||||| Sbjct 77094 AATGTGATCGTCTTTCCGGTCAGGGTTTTGACAAAGATCTGCATT 77138 Score = 120 bits (132), Expect = 7e-22 Identities = 155/211 (73%), Gaps = 5/211 (2%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| |||||||| ||||| || ||||||||||| || | | || | ||||| || | Sbjct 76474 CAAG-TGAAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTACGTCCATCCTCGA 76532 Query 151957 G--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014 | ||||| ||||||||||| | || ||||| || | | |||||||||||| ||||| Sbjct 76533 GTTGCTTT--CCGGCGAAGATCAATCTTTGCTGATCTGGTGGGATTCCTTCCTTGTCTTG 76590 Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTT 152074 || || ||||| |||| | |||| || || || ||||||||||| || || Sbjct 76591 GATCTTGGCCTTGACGTTCTCGATAGTGTCAGAGGCTTCGACCTCAAGAGTAATGGTCTT 76650 Query 152075 GCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || ||||| || || ||||||| ||||||| Sbjct 76651 TCCTGTGAGTGTTTTGACGAAGATCTGCATT 76681 Score = 109 bits (120), Expect = 1e-18 Identities = 152/210 (72%), Gaps = 5/210 (2%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| |||||||| ||||| || ||||||||||| |||| | || | ||||| || | Sbjct 75966 CAAG-TGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTACGACCATCCTCAA 76024 Query 151957 G--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014 | ||||| ||||||||||| | | || || || | | |||||| ||||| ||||| Sbjct 76025 GTTGCTTT--CCGGCGAAGATCAAACGTTGTTGATCTGGTGGGATTCCCTCCTTGTCTTG 76082 Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTT 152074 || || ||||| |||| | | |||| ||| ||| ||||| | || || || || Sbjct 76083 GATCTTGGCCTTGACGTTCTCAATGGTGTCGGAAGCCTCGACTTCCAAGGTGATGGTCTT 76142 Query 152075 GCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || | |||||| ||||||| |||||| Sbjct 76143 TCCAGTCAAAGTCTTGACGAAGATCTGCAT 76172 Score = 86.0 bits (94), Expect = 1e-11 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 151961 TTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTT 152020 ||| |||||||| || || || ||||| || | | |||||| ||||| ||||| || || Sbjct 77268 TTTACCGGCGAAAATGAGTCTTTGCTGATCTGGTGGGATTCCCTCCTTGTCTTGGATCTT 77327 Query 152021 TTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGT 152080 ||||| |||| | |||| || || || ||||||||||| || || || || Sbjct 77328 GGCCTTGACGTTCTCGATAGTGTCAGAGGCTTCGACCTCAAGAGTAATGGTCTTTCCTGT 77387 Query 152081 GAGAGTCTTCACGAAGACCTGCATT 152105 ||| || || ||||||| ||||||| Sbjct 77388 GAGTGTTTTGACGAAGATCTGCATT 77412 >seq549 Length=112515 Score = 125 bits (138), Expect = 2e-23 Identities = 158/215 (73%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || ||||| || || ||||| |||||||||||||| |||| ||||| | ||||| Sbjct 111912 AGAACGAGATGGAGGGTTGACTCCTTTTGGATGTTGTAGTCGGACAAAGTGCGACCATCC 111971 Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || || ||||| ||||||||||| | | ||||| || | | |||||| || || | Sbjct 111972 TCGAGTTGCTTT--CCGGCGAAGATTAAACGTTGCTGATCTGGTGGGATTCCCTCTTTGT 112029 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070 |||| || || ||||| |||| | | |||| || || || ||||| || || | Sbjct 112030 CTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCAGAGGCTTCAACCTCAAGGGTGATGG 112089 Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 | || || ||||||||||| ||||||| ||||||| Sbjct 112090 TCTTTCCAGTGAGAGTCTTGACGAAGATCTGCATT 112124 Score = 111 bits (122), Expect = 4e-19 Identities = 162/223 (73%), Gaps = 7/223 (3%) Strand=Plus/Plus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 ||||| | ||| || | || ||||| || || ||| ||||||||||||| | ||||| Sbjct 112131 CTGAGACGGAGAACCAAGTGGAGAGTGGATTCCTTT-GGATGTTGTAATCCGACAAAGTG 112189 Query 151944 CTCCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTC 152001 | ||||| || || ||||| ||||||||||| | || ||||| || | | ||||| Sbjct 112190 CGACCATCCTCAAGCTGCTTT--CCGGCGAAGATCAATCTTTGCTGATCTG-TGGGATTC 112246 Query 152002 CTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAA 152061 | ||||| |||||||| || ||||| |||| | | |||| ||| ||| ||||| | Sbjct 112247 C-TCCTTGTCTTGAATCTTGGCCTTGACGTTCTCAATGGTGTCAGAAGCCTCGACTTCCA 112305 Query 152062 GAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || || || | ||| || ||||||| |||||| Sbjct 112306 AGGTGATGGTCTTTCCAGTCAAAGTTTTGACGAAGATCTGCAT 112348 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153810969086215