Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20tropicalis_20[genbank_20GCA_5F000186765.1_202011- 01-31] 665 sequences; 79,321,433 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq542 187 5e-42 seq549 178 3e-39 seq625 170 4e-37 seq626 84.2 5e-11 >seq542 Length=114868 Score = 187 bits (206), Expect = 5e-42 Identities = 156/191 (82%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || || |||||||||||||| | ||| || || |||||||| ||||| || ||||| ||| Sbjct 75982 TCCTTCTGGATGTTGTAGTCGGAAAGGGTACGACCATCCTCAAGTTGCTTTCCGGCGAAG 76041 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 |||||||||||||| || || || |||||||||||||||||||| || || ||| | Sbjct 76042 ATCAAACGTTGTTGATCTGGTGGGATTCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTC 76101 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 || || ||||| ||||| |||||||| | ||||| ||||| || ||||||||||| ||| Sbjct 76102 TCAATGGTGTCGGAAGCCTCGACTTCCAAGGTGATGGTCTTTCCAGTCAAAGTCTTGACG 76161 Query 283089 AATATCTGCAT 283099 || |||||||| Sbjct 76162 AAGATCTGCAT 76172 Score = 158 bits (174), Expect = 3e-33 Identities = 150/192 (78%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || || |||||||||||||| | || || || |||||||| ||||| || ||||| ||| Sbjct 76490 TCCTTCTGGATGTTGTAGTCCGAGAGGGTACGTCCATCCTCGAGTTGCTTTCCGGCGAAG 76549 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 ||||| | ||| || || || || || ||||||||||||||||| || || ||| | Sbjct 76550 ATCAATCTTTGCTGATCTGGTGGGATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTC 76609 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 ||||||||||| || |||||||| || ||||| || ||||| || || | || || ||| Sbjct 76610 TCGATAGTGTCAGAGGCTTCGACCTCAAGAGTAATGGTCTTTCCTGTGAGTGTTTTGACG 76669 Query 283089 AATATCTGCATT 283100 || ||||||||| Sbjct 76670 AAGATCTGCATT 76681 Score = 152 bits (168), Expect = 1e-31 Identities = 150/194 (77%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 282907 TTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAA 282966 || ||||||||||||||||||| | | ||||| |||||||| || || || ||||| | Sbjct 76945 TTCCTTTTTGGATGTTGTAGTCGGACAAAGTGCGACCATCCTCAAGCTGCTTTCCGGCGA 77004 Query 282967 AGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGG 283026 ||||||| | ||| || || || || || ||||||||||| ||||| || || ||| Sbjct 77005 AGATCAATCTTTGCTGATCTGGTGGGATTCCTTCCTTGTCTTGAATCTTGGCCTTGACGT 77064 Query 283027 TATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAA 283086 | || || ||||| ||||| |||||||| | ||||||||||| || |||| || || | Sbjct 77065 TCTCAATGGTGTCGGAAGCCTCGACTTCCAATGTGATCGTCTTTCCGGTCAGGGTTTTGA 77124 Query 283087 CGAATATCTGCATT 283100 | || ||||||||| Sbjct 77125 CAAAGATCTGCATT 77138 Score = 141 bits (156), Expect = 2e-28 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || || || ||||| || ||||| | ||| || || ||||| |||||||||| Sbjct 76682 CCTCCGCGGAGACGAAGAACGAGATGGAGAGTGGACTCCTTCTGGATATTGTAGTCAGAG 76741 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || | || ||||| || || || ||||| ||||| | | || ||||| || Sbjct 76742 AGAGTTCTTCCGTCCTCAAGCTGCTTTCCGGCGAAGATAAGTCTCTGCTGGTCTGGTGGG 76801 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || |||||||||||||||||||| || || ||| | || || || || |||||||| || Sbjct 76802 ATTCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCAATGGTATCAGAAGCTTCAACC 76861 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 || || ||||| ||||| || || | ||||| ||||| ||||||||| Sbjct 76862 TCAAGGGTGATGGTCTTTCCTGTGAGGGTCTTGACGAAGATCTGCATT 76909 Score = 125 bits (138), Expect = 1e-23 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || || || ||||| || ||||| | ||| || || ||||| |||||||||| Sbjct 77413 CCTCCGCGGAGACGAAGAACGAGATGGAGAGTGGACTCCTTCTGGATATTGTAGTCAGAG 77472 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || | ||||| || || || || ||||| ||||| | | || ||||| || Sbjct 77473 AGAGTTCTTCCATCTTCGAGCTGCTTTCCGGCGAAGATGAGTCTCTGCTGGTCTGGTGGG 77532 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || ||||||||||||||||| || || || | ||||| || || ||||| || || Sbjct 77533 ATTCCTTCCTTGTCTTGGATCTTGGCCTTGACATTTTCGATGGTATCAGAAGCCTCCACC 77592 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||| || || || ||||| || || ||||| || ||||| Sbjct 77593 TCCAGGGTGATGGTTTTTCCAGTCAACGTTTTGACGAAGATTTGCAT 77639 Score = 120 bits (132), Expect = 6e-22 Identities = 113/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016 || || |||||||| | | |||||| || ||||| || ||||||||||||||||| Sbjct 76310 TTACCAGCAAAGATAAGTCTTTGTTGATCTGGAGGAATTCCTTCCTTGTCTTGGATCTTG 76369 Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076 || || ||| | ||||| ||||| || |||||||| ||||||||||| ||||| || || Sbjct 76370 GCCTTGACGTTCTCGATGGTGTCAGAGGCTTCGACCTCGAGAGTGATAGTCTTTCCGGTG 76429 Query 283077 AAAGTCTTAACGAATATCTGCATT 283100 | ||||||| ||| || |||||| Sbjct 76430 AGGGTCTTAATGAAAATTTGCATT 76453 Score = 109 bits (120), Expect = 1e-18 Identities = 113/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 282953 TTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGAT 283012 || ||| ||||| || || | | ||| || || || || ||||||||||||||||| Sbjct 77265 TTATTTACCGGCGAAAATGAGTCTTTGCTGATCTGGTGGGATTCCCTCCTTGTCTTGGAT 77324 Query 283013 CTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACC 283072 ||| || || ||| | ||||||||||| || |||||||| || ||||| || ||||| || Sbjct 77325 CTTGGCCTTGACGTTCTCGATAGTGTCAGAGGCTTCGACCTCAAGAGTAATGGTCTTTCC 77384 Query 283073 CGTCAAAGTCTTAACGAATATCTGCATT 283100 || | || || ||||| ||||||||| Sbjct 77385 TGTGAGTGTTTTGACGAAGATCTGCATT 77412 >seq549 Length=112515 Score = 178 bits (196), Expect = 3e-39 Identities = 176/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || ||||| || ||||| || ||||| | || || ||||||||||||||||| | Sbjct 111897 CCTCCACGGAGACGAAGAACGAGATGGAGGGTTGACTCCTTTTGGATGTTGTAGTCGGAC 111956 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 | ||||| |||||||| ||||| || ||||| ||||| |||||||| || || || Sbjct 111957 AAAGTGCGACCATCCTCGAGTTGCTTTCCGGCGAAGATTAAACGTTGCTGATCTGGTGGG 112016 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||| |||||||||||||| || || ||| | ||||| ||||| || ||||| || Sbjct 112017 ATTCCCTCTTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCAGAGGCTTCAACC 112076 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 || || ||||| ||||| || || | |||||| ||||| ||||||||| Sbjct 112077 TCAAGGGTGATGGTCTTTCCAGTGAGAGTCTTGACGAAGATCTGCATT 112124 Score = 145 bits (160), Expect = 2e-29 Identities = 145/187 (78%), Gaps = 2/187 (1%) Strand=Plus/Plus Query 282913 TTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCA 282972 ||||||||||||| || | | ||||| |||||||| || || || ||||| ||||||| Sbjct 112164 TTTGGATGTTGTAATCCGACAAAGTGCGACCATCCTCAAGCTGCTTTCCGGCGAAGATCA 112223 Query 282973 AACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGA 283032 | | ||| || || ||| | ||||||||||||| ||||| || || ||| | || | Sbjct 112224 ATCTTTGCTGATCTGTGGGATT--CCTCCTTGTCTTGAATCTTGGCCTTGACGTTCTCAA 112281 Query 283033 TAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATA 283092 | ||||| ||||| |||||||| | ||||| ||||| || |||||||| || ||||| | Sbjct 112282 TGGTGTCAGAAGCCTCGACTTCCAAGGTGATGGTCTTTCCAGTCAAAGTTTTGACGAAGA 112341 Query 283093 TCTGCAT 283099 ||||||| Sbjct 112342 TCTGCAT 112348 Score = 116 bits (128), Expect = 8e-21 Identities = 126/167 (75%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| ||||| || ||||| |||| ||| | ||| ||| || ||||| |||||||||| Sbjct 112349 ACCTCCACGAAGACGAAGAACCAAATGAAGAGTGGATTCCTTCTGGATATTGTAGTCAGA 112408 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || | || ||||| || || || ||||| |||||||| | ||| ||||| || Sbjct 112409 GAGAGTTCTTCCGTCCTCAAGCTGCTTTCCGGCGAAGATCAATCTTTGCTGGTCTGGTGG 112468 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGT 283038 || |||||||||||||||||||| || || ||| | || || |||| Sbjct 112469 GATTCCCTCCTTGTCTTGGATCTTAGCCTTGACGTTCTCAATGGTGT 112515 >seq625 Length=33334924 Score = 170 bits (188), Expect = 4e-37 Identities = 175/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 282871 AACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG 282930 |||| ||||| || || || |||| || | || || ||||||||||||||||| | Sbjct 31079088 AACCTCCACGGAGACGGAGAACCAAGTGGAGAGTCGACTCCTTTTGGATGTTGTAGTCGG 31079029 Query 282931 CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCG 282990 || || || |||||||| ||||| || ||||| ||||||| | ||| || || | Sbjct 31079028 AGAGAGTACGTCCATCCTCGAGTTGCTTTCCGGCGAAGATCAGTCTTTGCTGATCTGGTG 31078969 Query 282991 GAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 |||| || ||||||||||||||||| || || || | ||||| || || || || |||| Sbjct 31078968 GAATTCCTTCCTTGTCTTGGATCTTAGCCTTGACATTCTCGATGGTATCGGAGGCCTCGA 31078909 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||||| || || ||||||||||||| |||||| ||||| || ||||| Sbjct 31078908 CTTCGAGGGTAATAGTCTTACCCGTCAGAGTCTTGACGAAGATTTGCAT 31078860 >seq626 Length=20921866 Score = 84.2 bits (92), Expect = 5e-11 Identities = 130/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 230226 ATCGGCATGAATGCTGATCTCATGGGGCAATATATCGAATTCGTAGCTGATCGTATTTTC 230285 ||||| |||||| | ||| ||| ||||| || || || || || |||| | | || Sbjct 3165225 ATCGGAATGAATTGTCGTCTGATGTCCCAATACATTGAGTTTGTCGCCGATCATTTGCTC 3165284 Query 230286 GTGGCGCTAGGGTACGAGAAAGTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAGCTC 230345 | ||| || | || ||| |||| || ||||||||| || | || |||||| | Sbjct 3165285 CAAGAGCTCGGATGTGACAAACTGTACAAAGTCAAGAACCCATTTGACTTCATGGAGAAC 3165344 Query 230346 ATTTCACTCCAGGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGCGATTATCAAAGGCCC 230405 ||||| || | || || || ||||||||||| || |||||| ||| |||||| | || Sbjct 3165345 ATTTCGATCGACGGAAAGACCAACTTCTTCGAGAAACGTGTCTCCGAATATCAACGTCCA 3165404 Query 230406 GGTGTA 230411 || ||| Sbjct 3165405 GGAGTA 3165410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046730281454910