Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20tropicalis_20[genbank_20GCA_5F000186765.1_202011- 01-31] 665 sequences; 79,321,433 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq542 129 4e-25 seq625 120 2e-22 seq549 116 3e-21 >seq542 Length=114868 Score = 129 bits (142), Expect = 4e-25 Identities = 171/235 (73%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || |||||| ||||| || | | |||| |||||| || |||||| ||||||||||| Sbjct 76447 TTGCATTCCTCCTCTGAGACGAAGAACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTA 76506 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 || | ||| || | || || || ||||| ||||| |||||||| | |||||||| Sbjct 76507 GTCCGAGAGGGTACGTCCATCCTCGAGTTGCTTTCCGGCGAAGATCAATCTTTGCTGATC 76566 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGG 44282 || || | |||||||| || ||||| || | | |||| | || ||||| | || Sbjct 76567 TGGTGGGATTCCTTCCTTGTCTTGGATCTT-GGCCTTGACGTTCTCGATAGTGTCAGAGG 76625 Query 44283 ATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| ||||| | ||||| |||||||| ||||| || || |||||||| ||||| Sbjct 76626 CTTCGACCTCAAGAGTAATGGTCTTTCCTGTGAGTGTTTTGACGAAGATCTGCAT 76680 Score = 125 bits (138), Expect = 5e-24 Identities = 170/233 (73%), Gaps = 3/233 (1%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTT-GGATGTTGTAAT 44165 |||||| ||||| || | | |||| |||||| ||| ||||||| |||||||||| | Sbjct 76906 CATTCCTCCTCTGAGACGGAGAACCAAGTGAAGAGTGGATTCCTTTTTGGATGTTGTAGT 76965 Query 44166 CGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTG 44225 ||| | ||| | || || |||||||| ||||| |||||||| | |||||||||| Sbjct 76966 CGGACAAAGTGCGACCATCCTCAAGCTGCTTTCCGGCGAAGATCAATCTTTGCTGATCTG 77025 Query 44226 AAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGAT 44284 || | |||||||| || ||||| || | | |||| | |||||||||| | Sbjct 77026 GTGGGATTCCTTCCTTGTCTTGAATCTT-GGCCTTGACGTTCTCAATGGTGTCGGAAGCC 77084 Query 44285 TCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || |||| || ||||||||||| || ||||| || || ||||| ||||| Sbjct 77085 TCGACTTCCAATGTGATCGTCTTTCCGGTCAGGGTTTTGACAAAGATCTGCAT 77137 Score = 120 bits (132), Expect = 2e-22 Identities = 169/235 (72%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || |||||| ||||||| | | |||| |||||| || |||||| ||||||||||| Sbjct 75939 TTGCATTCCTCCTCTCAAACGGAGAACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTA 75998 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 |||| || || | || || || ||||| ||||| ||||||||||| || ||||| Sbjct 75999 GTCGGAAAGGGTACGACCATCCTCAAGTTGCTTTCCGGCGAAGATCAAACGTTGTTGATC 76058 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGG 44282 || || | || ||||| || ||||| || | | |||| | |||||||||| | Sbjct 76059 TGGTGGGATTCCCTCCTTGTCTTGGATCTT-GGCCTTGACGTTCTCAATGGTGTCGGAAG 76117 Query 44283 ATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || |||| || || |||||||| || | ||||| |||||||| ||||| Sbjct 76118 CCTCGACTTCCAAGGTGATGGTCTTTCCAGTCAAAGTCTTGACGAAGATCTGCAT 76172 Score = 102 bits (112), Expect = 6e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || || || || ||| |||||| ||||| ||||| || | ||| | |||| || Sbjct 76700 ACGAGATGGAGAGTGGACTCCTTCTGGATATTGTAGTCAGAGAGAGTTCTTCCGTCCTCA 76759 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| ||||| ||||| | | |||||| |||| || | || ||||| || Sbjct 76760 AGCTGCTTTCCGGCGAAGATAAGTCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCTTGG 76819 Query 44249 ATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| ||| | |||| | ||||| || | | ||| ||||| | || || ||||| Sbjct 76820 ATCTTGGCCTTGAC-GTTCTCAATGGTATCAGAAGCTTCAACCTCAAGGGTGATGGTCTT 76878 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| ||||||||||| |||||||| ||||| Sbjct 76879 TCCTGTGAGGGTCTTGACGAAGATCTGCAT 76908 Score = 95.1 bits (104), Expect = 9e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || || || || ||| |||||| ||||| ||||| || | ||| | | || || Sbjct 77431 ACGAGATGGAGAGTGGACTCCTTCTGGATATTGTAGTCAGAGAGAGTTCTTCCATCTTCG 77490 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| ||||| ||||| | | |||||| |||| || | |||||||| || Sbjct 77491 AGCTGCTTTCCGGCGAAGATGAGTCTCTGCTGGTCTGGTGGGATTCCTTCCTTGTCTTGG 77550 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||| | || | ||||| || | | |||||||||| || || || ||| Sbjct 77551 ATCTTGGCCTTGACATTTTCGATGGTATCAGAAGCCTCCACCTCCAGGGTGATGGTTTTT 77610 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCATGAT 44340 || || | || || ||||||||||||||||| Sbjct 77611 CCAGTCAACGTTTTGACGAAGATTTGCATGAT 77642 Score = 84.2 bits (92), Expect = 2e-11 Identities = 107/145 (74%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 44194 CTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTT 44253 ||| || |||||||| | | || ||||||| ||| | |||||||| || ||||| Sbjct 76309 CTTACCAGCAAAGATAAGTCTTTGTTGATCTGGAGGAATTCCTTCCTTGTCTTGGATCTT 76368 Query 44254 CTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCG 44312 ||| | |||| | |||||||| | || ||| ||||| | || || |||||||| | Sbjct 76369 GGCCTTGAC-GTTCTCGATGGTGTCAGAGGCTTCGACCTCGAGAGTGATAGTCTTTCCGG 76427 Query 44313 TGAGGGTCTTCACGAAGATTTGCAT 44337 |||||||||| | ||| |||||||| Sbjct 76428 TGAGGGTCTTAATGAAAATTTGCAT 76452 >seq625 Length=33334924 Score = 120 bits (132), Expect = 2e-22 Identities = 153/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| ||| || || |||||||||||||||||| |||| ||| || | || || Sbjct 31079068 ACCAAGTGGAGAGTCGACTCCTTTTGGATGTTGTAGTCGGAGAGAGTACGTCCATCCTCG 31079009 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 || ||||| ||||| ||||||| | |||||||||| || | |||||||| || Sbjct 31079008 AGTTGCTTTCCGGCGAAGATCAGTCTTTGCTGATCTGGTGGAATTCCTTCCTTGTCTTGG 31078949 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||| | | | ||||| |||| || || || || | ||||| ||||| Sbjct 31078948 ATCTTAGCCTTGACATTCTCGATGGTATCGGAGGCCTCGACTTCGAGGGTAATAGTCTTA 31078889 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCATGA 44339 ||||| || ||||| |||||||||||||||| Sbjct 31078888 CCCGTCAGAGTCTTGACGAAGATTTGCATGA 31078858 >seq549 Length=112515 Score = 116 bits (128), Expect = 3e-21 Identities = 143/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 44146 CTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205 |||||||||||||||||| |||| | ||| | || || || ||||| ||||| || Sbjct 111932 CTCCTTTTGGATGTTGTAGTCGGACAAAGTGCGACCATCCTCGAGTTGCTTTCCGGCGAA 111991 Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGT 44265 ||| ||||| |||||||||| || | || || || || ||||| || | | || Sbjct 111992 GATTAAACGTTGCTGATCTGGTGGGATTCCCTCTTTGTCTTGGATCTT-GGCCTTGACGT 112050 Query 44266 TC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCA 44324 || | |||||||| | || ||| ||||| | || || |||||||| ||||| ||||| | Sbjct 112051 TCTCGATGGTGTCAGAGGCTTCAACCTCAAGGGTGATGGTCTTTCCAGTGAGAGTCTTGA 112110 Query 44325 CGAAGATTTGCAT 44337 ||||||| ||||| Sbjct 112111 CGAAGATCTGCAT 112123 Score = 95.1 bits (104), Expect = 9e-15 Identities = 164/232 (71%), Gaps = 5/232 (2%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 |||||| ||||| || | | |||| ||| || ||| |||||| ||||||||||||| Sbjct 112121 CATTCCTCCTCTGAGACGGAGAACCAAGTGGAGAGTGGATTCCTTT-GGATGTTGTAATC 112179 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | | ||| | || || |||||||| ||||| |||||||| | |||||||||| Sbjct 112180 CGACAAAGTGCGACCATCCTCAAGCTGCTTTCCGGCGAAGATCAATCTTTGCTGATCTG- 112238 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | || ||||| || ||||| || | | |||| | |||||||| | | | Sbjct 112239 TGGGATTCC-TCCTTGTCTTGAATCTT-GGCCTTGACGTTCTCAATGGTGTCAGAAGCCT 112296 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || |||| || || |||||||| || | || || |||||||| ||||| Sbjct 112297 CGACTTCCAAGGTGATGGTCTTTCCAGTCAAAGTTTTGACGAAGATCTGCAT 112348 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359987482390305