Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20tropicalis_20[genbank_20GCA_5F000186765.1_202011- 01-31] 665 sequences; 79,321,433 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq549 185 2e-41 seq542 176 1e-38 seq625 159 8e-34 >seq549 Length=112515 Score = 185 bits (204), Expect = 2e-41 Identities = 165/207 (80%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || |||||||| ||||| || |||||||| ||||| ||| ||| ||| Sbjct 112120 CAGATCTTCGTCAAGACTCTCACTGGAAAGACCATCACCCTTGAGGTTGAAGCCTCTGAC 112061 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||||||||| ||||| || |||||||| |||||||| || || |||||| Sbjct 112060 ACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAAGAGGGAATCCCACCAGATCAGCAA 112001 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||||||||| || ||||| ||||| | ||| | |||| || ||| || Sbjct 112000 CGTTTAATCTTCGCCGGAAAGCAACTCGAGGATGGTCGCACTTTGTCCGACTACAACATC 111941 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 ||||| || ||||| || ||||| ||| Sbjct 111940 CAAAAGGAGTCAACCCTCCATCTCGTT 111914 Score = 132 bits (146), Expect = 1e-25 Identities = 163/219 (74%), Gaps = 3/219 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| |||||| | || ||||| || |||||| | || || || || ||| Sbjct 112345 CAGATCTTCGTCAAAACTTTGACTGGAAAGACCATCACCTTGGAAGTCGAGGCTTCTGAC 112286 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||||||||| |||||||| ||| ||| ||||||||| | || |||||| Sbjct 112285 ACCATTGAGAACGTCAAGGCCAAGATTCAAGAC-AAGGAGGAATCCC-ACAGATCAGCAA 112228 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||||||||| ||||| || ||||| | ||| | | ||||| ||| || Sbjct 112227 AGATTGATCTTCGCCGGAAAGCAGCTTGAGGATGGTCGCACTTTGTCGGATTACAACATC 112168 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 | ||| ||||| || || || | ||| | | |||||| Sbjct 112167 C-AAAGGAATCCACTCTCCACTTGGTTCTCCGTCTCAGA 112130 Score = 120 bits (132), Expect = 7e-22 Identities = 116/149 (78%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||||||||| ||||| || ||||| || |||||||| || ||||||| Sbjct 112515 ACACCATTGAGAACGTCAAGGCTAAGATCCAAGACAAGGAGGGAATCCCACCAGACCAGC 112456 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 || || | |||||||||||||| ||||| || || ||||| ||||| | || || || Sbjct 112455 AAAGATTGATCTTCGCCGGAAAGCAGCTTGAGGACGGAAGAACTCTCTCTGACTACAATA 112396 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTT 178130 |||| || ||||| || || ||| | ||| Sbjct 112395 TCCAGAAGGAATCCACTCTTCATTTGGTT 112367 >seq542 Length=114868 Score = 176 bits (194), Expect = 1e-38 Identities = 163/207 (79%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| ||||| | || |||||||| |||||||| |||||||| || || Sbjct 77636 CAAATCTTCGTCAAAACGTTGACTGGAAAAACCATCACCCTGGAGGTGGAGGCTTCTGAT 77577 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || ||||| ||||| || ||||| ||||||||||| || |||||||| Sbjct 77576 ACCATCGAAAATGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCACCAGACCAGCAG 77517 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| |||||||||||||| ||||||||||||||||| ||||| | || || || || Sbjct 77516 AGACTCATCTTCGCCGGAAAGCAGCTCGAAGATGGAAGAACTCTCTCTGACTACAATATC 77457 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 || || || || || || ||||| ||| Sbjct 77456 CAGAAGGAGTCCACTCTCCATCTCGTT 77430 Score = 167 bits (184), Expect = 6e-36 Identities = 161/207 (78%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||||||||| || |||||||| ||||| ||| || || Sbjct 76905 CAGATCTTCGTCAAGACCCTCACAGGAAAGACCATCACCCTTGAGGTTGAAGCTTCTGAT 76846 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||||||||| ||||| || ||||| || |||||||| || |||||||| Sbjct 76845 ACCATTGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGAATCCCACCAGACCAGCAG 76786 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||||||||||||||||| ||||| || || ||||| ||||| | || || || || Sbjct 76785 AGACTTATCTTCGCCGGAAAGCAGCTTGAGGACGGAAGAACTCTCTCTGACTACAATATC 76726 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 || || || || || || ||||| ||| Sbjct 76725 CAGAAGGAGTCCACTCTCCATCTCGTT 76699 Score = 161 bits (178), Expect = 2e-34 Identities = 167/219 (76%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| ||||| ||||||||||| || || || || ||||| ||| ||| ||| Sbjct 76677 CAGATCTTCGTCAAAACACTCACAGGAAAGACCATTACTCTTGAGGTCGAAGCCTCTGAC 76618 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||||||||| ||||| || ||||| ||||||||||| || || |||||| Sbjct 76617 ACTATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCACCAGATCAGCAA 76558 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||||||||| || ||||| |||||| | || || | || || ||| || Sbjct 76557 AGATTGATCTTCGCCGGAAAGCAACTCGAGGATGGACGTACCCTCTCGGACTACAACATC 76498 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 || || || || || || || | ||| | | |||||| Sbjct 76497 CAGAAGGAGTCGACTCTTCACTTGGTTCTTCGTCTCAGA 76459 Score = 150 bits (166), Expect = 4e-31 Identities = 166/220 (75%), Gaps = 1/220 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || ||||| || || ||||| |||||||| | || || || || ||| Sbjct 77134 CAGATCTTTGTCAAAACCCTGACCGGAAAGACGATCACATTGGAAGTCGAGGCTTCCGAC 77075 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||||||||| |||||||| ||||| ||||||||||| || || |||||| Sbjct 77074 ACCATTGAGAACGTCAAGGCCAAGATTCAAGACAAGGAAGGAATCCCACCAGATCAGCAA 77015 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||||||||| ||||| || ||||| | ||| | |||| || ||| || Sbjct 77014 AGATTGATCTTCGCCGGAAAGCAGCTTGAGGATGGTCGCACTTTGTCCGACTACAACATC 76955 Query 178104 CAAAAA-GAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||||| ||||| || || || | ||| | | |||||| Sbjct 76954 CAAAAAGGAATCCACTCTTCACTTGGTTCTCCGTCTCAGA 76915 Score = 131 bits (144), Expect = 4e-25 Identities = 113/140 (81%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||| | || || ||||| ||||| || ||||| |||||||| ||| ||| ||| Sbjct 76449 CAAATTTTCATTAAGACCCTCACCGGAAAGACTATCACTCTCGAGGTCGAAGCCTCTGAC 76390 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||||||||| ||||| || ||||| |||||||| ||||| || || ||| Sbjct 76389 ACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAAGGAATTCCTCCAGATCAACAA 76330 Query 178044 CGACTTATCTTCGCCGGAAA 178063 |||||||||| || || || Sbjct 76329 AGACTTATCTTTGCTGGTAA 76310 Score = 129 bits (142), Expect = 1e-24 Identities = 154/208 (74%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || ||| | || ||||| || |||||| | || || || || ||| Sbjct 76169 CAGATCTTCGTCAAGACTTTGACTGGAAAGACCATCACCTTGGAAGTCGAGGCTTCCGAC 76110 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||||||||| ||||| || ||||| || |||||||| || || || ||| Sbjct 76109 ACCATTGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGAATCCCACCAGATCAACAA 76050 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||||||||| || || || ||||| | || ||| |||| || ||| || Sbjct 76049 CGTTTGATCTTCGCCGGAAAGCAACTTGAGGATGGTCGTACCCTTTCCGACTACAACATC 75990 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTT 178131 || || || || || || || |||| || Sbjct 75989 CAGAAGGAGTCGACTCTTCA-CTTGGTT 75963 Score = 123 bits (136), Expect = 6e-23 Identities = 112/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| ||||| ||||||||||| || || || || ||||| ||| ||| ||| Sbjct 77408 CAGATCTTCGTCAAAACACTCACAGGAAAGACCATTACTCTTGAGGTCGAAGCCTCTGAC 77349 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||||||||| ||||| || ||||| || |||||||| || || |||||| Sbjct 77348 ACTATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGAATCCCACCAGATCAGCAA 77289 Query 178044 CGACTTATCTTCGCCGGAAAA 178064 |||| || |||||||| ||| Sbjct 77288 AGACTCATTTTCGCCGGTAAA 77268 >seq625 Length=33334924 Score = 159 bits (176), Expect = 8e-34 Identities = 161/208 (77%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || ||||| || || || || || |||||||| || || ||| || Sbjct 31078863 CAAATCTTCGTCAAGACTCTGACGGGTAAGACTATTACCCTCGAAGTCGAGGCCTCCGAT 31078922 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| ||||| ||||| || ||||| |||||||| || || || |||||| Sbjct 31078923 ACCATCGAGAATGTCAAGGCTAAGATCCAAGACAAGGAAGGAATTCCACCAGATCAGCAA 31078982 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| |||||||||||||| || ||||| |||||| | ||||| |||| || ||| || Sbjct 31078983 AGACTGATCTTCGCCGGAAAGCAACTCGAGGATGGACGTACTCTCTCCGACTACAACATC 31079042 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTT 178131 ||||| || || || || || |||| || Sbjct 31079043 CAAAAGGAGTCGACTCTCCA-CTTGGTT 31079069 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203720943834010