Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cylicostephanus_20goldi_20[genbank_20GCA_5F000951155.1_202014-10-12] 154,509 sequences; 173,362,437 total letters Query= NC_000902.1 Length=60942 Score E Sequences producing significant alignments: (Bits) Value seq17020 1049 0.0 >seq17020 Length=1896 Score = 1049 bits (1162), Expect = 0.0 Identities = 730/819 (89%), Gaps = 15/819 (2%) Strand=Plus/Plus Query 57059 TTTACATCCACTTCAACACTGCTCAGGTCTTTATCAATTTCACCCTCAATTCTTACTTTG 57118 |||||||||| |||||||||| ||||||||||||||| ||||||||| ||| |||| || Sbjct 8 TTTACATCCAGTTCAACACTGTTCAGGTCTTTATCAAGTTCACCCTCGATTATTACCTTA 67 Query 57119 TCTTTCGGAGAAACATTCTGCCCGGCCCATATGCTGTCATCGATATCCGTGACAATTGTC 57178 |||| |||||| ||||||||||||||||||| || |||||||||||||||||||| || Sbjct 68 TCTTCCGGAGACACATTCTGCCCGGCCCATACACTTTCATCGATATCCGTGACAATGGTT 127 Query 57179 CCGCTATTGTCACGAAACTCATAACGTTCATCACCCACTTTTTTAACGATGCTCCCTTCA 57238 |||||| |||| |||||||||||||| |||||||||| ||||||||||||| ||||||| Sbjct 128 CCGCTACTGTCGCGAAACTCATAACGATCATCACCCAATTTTTTAACGATGTGCCCTTCA 187 Query 57239 AGGATAACCCATGCATCATCCTTCAGTTCTTTTGCCTGCGCTACTGTTG---AACGCTCT 57295 |||||||||||||| || |||||| |||||||||||||| ||||||||| |||||||| Sbjct 188 AGGATAACCCATGCCTCGTCCTTCTGTTCTTTTGCCTGCACTACTGTTGTTGAACGCTCT 247 Query 57296 GCTTCAGGCCCTTGGAAACCGCCCTGCTGTGCAAAAGCGCCAAAAGACACACCAGAAATA 57355 ||||||| ||| | ||||| ||||| ||||||||| ||||||||||||| | |||| | Sbjct 248 GCTTCAGACCCCAGAAAACCTCCCTGTTGTGCAAAAACGCCAAAAGACACGCAGGAAAAA 307 Query 57356 AGTGCTGCAATCAATACCTTTTTCATTCATAGTCCTCTTTCAGAGATGAACATTCAAACA 57415 || ||||| || ||||| ||||||||| || |||||||| ||| || ||||| | || Sbjct 308 AGGGCTGCGATTAATACTTTTTTCATT-ATCGTCCTCTTCAAGAAATTAACATGAACACT 366 Query 57416 -GCATTTTCAGTATGGTAAAGCGCGGGTGCGTTGAGGATGCCTGACACATCAGAGGTGGC 57474 ||||| ||| || |||| |||||||||||||||||||||||||||||||||||||| Sbjct 367 TGCATTG-CAGCATA-TAAAATGCGGGTGCGTTGAGGATGCCTGACACATCAGAGGTGGC 424 Query 57475 GGGAGATTACTCCCCCGCTTGGTCTCTTACTTCTCAGATTCGTAGTCTACGAAGACAGCG 57534 | | |||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 425 GAGGGATTTCTCCCTCGCCTGGTCTCTTACTTCTCAGATTCGTAGTCTACGAAGACAGCG 484 Query 57535 ACCTCCGTCTGACCGGTTCGGATTCGCACCTCGCAGAGGTCTTTCCTCGTTACCAGTGCC 57594 ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 485 ACCTCCGTCTGGCCGGTTCGGATTCGTACCTCGCAGAGGTCTTTCCTCGTTACCAGTGCC 544 Query 57595 GTCACTATGACGGTTAAACAGATGACGATCAGGGCGATTAACATCGCCTTTTGCTGCTTC 57654 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 545 GTCACTATGACGGTTAAACAGATGACGATCAGGGCGATTAACATCGCCTTTTGCTGCTTC 604 Query 57655 ATAGCCTGCTTCTCCTTGCCTTTCGGCACGTAAGAGGCTAACCTACATGT---GTTCAGC 57711 ||||||||||||||||||||||||||| ||||||||||||||||| || | ||| | Sbjct 605 ATAGCCTGCTTCTCCTTGCCTTTCGGCTCGTAAGAGGCTAACCTAGATTTACCGTT---C 661 Query 57712 ATGGATTGAGCCTCAGATTAATGTTAAGCGTCTTGCCGGACGCGTAATGTTAACTGGGGC 57771 || ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| Sbjct 662 ATAGATTGAGCCTCAGATTAATGTTAAGCGTCTTGCAGGACGTGTAATGTTAACTGGGGC 721 Query 57772 TTTTCTCTATCTGCCGT-TGGTGTTCATGCCCGAGGCAGATAGCCTCAAGCACCCGCAGC 57830 |||||||| |||||| | |||| ||||||||||||||| ||||||||||||||||||| Sbjct 722 TTTTCTCTGTCTGCCTTACGGTG-GCATGCCCGAGGCAGACAGCCTCAAGCACCCGCAGC 780 Query 57831 AATTCTACTTAACTCTCCTTTTCCCGCAAACCGTTTTTA 57869 ||||||||||||||||| ||| |||||||||||||||| Sbjct 781 AATTCTACTTAACTCTCGCTTTACCGCAAACCGTTTTTA 819 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 194535211786832