Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cylicostephanus_20goldi_20[genbank_20GCA_5F000951155.1_202014-10-12] 154,509 sequences; 173,362,437 total letters Query= NC_000924.1 Length=61670 Score E Sequences producing significant alignments: (Bits) Value seq17020 1045 0.0 >seq17020 Length=1896 Score = 1045 bits (1158), Expect = 0.0 Identities = 729/819 (89%), Gaps = 15/819 (2%) Strand=Plus/Plus Query 58018 TTTACATCCACTTCAACACTGCTCAGGTCTTTATCAATTTCACCCTCAATTCTTACTTTG 58077 |||||||||| |||||||||| ||||||||||||||| ||||||||| ||| |||| || Sbjct 8 TTTACATCCAGTTCAACACTGTTCAGGTCTTTATCAAGTTCACCCTCGATTATTACCTTA 67 Query 58078 TCTTTCGGAGAAACATTCTGACCGGCCCATATGCTGTCATCGATATCCGTGACAATTGTC 58137 |||| |||||| |||||||| |||||||||| || |||||||||||||||||||| || Sbjct 68 TCTTCCGGAGACACATTCTGCCCGGCCCATACACTTTCATCGATATCCGTGACAATGGTT 127 Query 58138 CCGCTATTGTCACGAAACTCATAACGTTCATCACCCACTTTTTTAACGATGCTCCCTTCA 58197 |||||| |||| |||||||||||||| |||||||||| ||||||||||||| ||||||| Sbjct 128 CCGCTACTGTCGCGAAACTCATAACGATCATCACCCAATTTTTTAACGATGTGCCCTTCA 187 Query 58198 AGGATAACCCATGCATCATCCTTCAGTTCTTTTGCCTGCGCTACTGTTG---AACGCTCT 58254 |||||||||||||| || |||||| |||||||||||||| ||||||||| |||||||| Sbjct 188 AGGATAACCCATGCCTCGTCCTTCTGTTCTTTTGCCTGCACTACTGTTGTTGAACGCTCT 247 Query 58255 GCTTCAGGCCCTTGGAAACCGCCCTGCTGTGCAAAAGCGCCAAAAGACACACCAGAAATA 58314 ||||||| ||| | ||||| ||||| ||||||||| ||||||||||||| | |||| | Sbjct 248 GCTTCAGACCCCAGAAAACCTCCCTGTTGTGCAAAAACGCCAAAAGACACGCAGGAAAAA 307 Query 58315 AGTGCTGCAATCAATACCTTTTTCATTCATAGTCCTCTTTCAGAGATGAACATTCAAACA 58374 || ||||| || ||||| ||||||||| || |||||||| ||| || ||||| | || Sbjct 308 AGGGCTGCGATTAATACTTTTTTCATT-ATCGTCCTCTTCAAGAAATTAACATGAACACT 366 Query 58375 -GCATTTTCAGTATGGTAAAGCGCGGGTGCGTTGAGGATGCCTGACACATCAGAGGTGGC 58433 ||||| ||| || |||| |||||||||||||||||||||||||||||||||||||| Sbjct 367 TGCATTG-CAGCATA-TAAAATGCGGGTGCGTTGAGGATGCCTGACACATCAGAGGTGGC 424 Query 58434 GGGAGATTACTCCCCCGCTTGGTCTCTTACTTCTCAGATTCGTAGTCTACGAAGACAGCG 58493 | | |||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 425 GAGGGATTTCTCCCTCGCCTGGTCTCTTACTTCTCAGATTCGTAGTCTACGAAGACAGCG 484 Query 58494 ACCTCCGTCTGACCGGTTCGGATTCGCACCTCGCAGAGGTCTTTCCTCGTTACCAGTGCC 58553 ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 485 ACCTCCGTCTGGCCGGTTCGGATTCGTACCTCGCAGAGGTCTTTCCTCGTTACCAGTGCC 544 Query 58554 GTCACTATGACGGTTAAACAGATGACGATCAGGGCGATTAACATCGCCTTTTGCTGCTTC 58613 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 545 GTCACTATGACGGTTAAACAGATGACGATCAGGGCGATTAACATCGCCTTTTGCTGCTTC 604 Query 58614 ATAGCCTGCTTCTCCTTGCCTTTCGGCACGTAAGAGGCTAACCTACATGT---GTTCAGC 58670 ||||||||||||||||||||||||||| ||||||||||||||||| || | ||| | Sbjct 605 ATAGCCTGCTTCTCCTTGCCTTTCGGCTCGTAAGAGGCTAACCTAGATTTACCGTT---C 661 Query 58671 ATGGATTGAGCCTCAGATTAATGTTAAGCGTCTTGCCGGACGCGTAATGTTAACTGGGGC 58730 || ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| Sbjct 662 ATAGATTGAGCCTCAGATTAATGTTAAGCGTCTTGCAGGACGTGTAATGTTAACTGGGGC 721 Query 58731 TTTTCTCTATCTGCCGT-TGGTGTTCATGCCCGAGGCAGATAGCCTCAAGCACCCGCAGC 58789 |||||||| |||||| | |||| ||||||||||||||| ||||||||||||||||||| Sbjct 722 TTTTCTCTGTCTGCCTTACGGTG-GCATGCCCGAGGCAGACAGCCTCAAGCACCCGCAGC 780 Query 58790 AATTCTACTTAACTCTCCTTTTCCCGCAAACCGTTTTTA 58828 ||||||||||||||||| ||| |||||||||||||||| Sbjct 781 AATTCTACTTAACTCTCGCTTTACCGCAAACCGTTTTTA 819 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 196860537449856