Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cylicostephanus_20goldi_20[genbank_20GCA_5F000951155.1_202014-10-12] 154,509 sequences; 173,362,437 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq89190 89.7 6e-13 seq72481 82.4 9e-11 >seq89190 Length=803 Score = 89.7 bits (98), Expect = 6e-13 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 54131 ATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCC 54190 ||||| | ||||| ||||| | || |||| | | ||||||| ||||||||||| ||| Sbjct 296 ATATCTGCGTGCCAAGGTTCGAGATAGATGGCAAAAGCTCCAGGACGTTTGTTTCCACCC 237 Query 54191 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGAT 54250 ||||| | |||| ||| |||||||| || || | | ||| |||| || ||||| ||| Sbjct 236 TGATCCACATATCGAGCAGTGTTATTGTACACACGAAGCATAGGAACAAGCCCATTAGAT 177 Query 54251 GCACCATTGGTC 54262 | ||||| ||| Sbjct 176 GTGCCATTAGTC 165 >seq72481 Length=921 Score = 82.4 bits (90), Expect = 9e-11 Identities = 107/148 (72%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 54791 TTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCCGGATGTTGTGTA 54850 ||||| | ||| ||||| ||||| | ||| || || ||||||||||| |||||||| || Sbjct 515 TTGTGCAAATTCGATACAGCTATGCGAGCAGCAAGTATGGCATAATCAGGATGTTGGGTG 574 Query 54851 GTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCAATTCTACCGTTGTTACTCCATTA 54910 || | ||||| |||| || | || | ||||| || || || || ||||| || Sbjct 575 GTCATCGAAGCTGCGGTTTCTGCCGCCAAGTTATCCAACTCCACTGTGGTCACTCCTTTG 634 Query 54911 TATATTCCTTGGATAACCTTCATAGCTA 54938 |||| |||| || || ||||| |||| Sbjct 635 TATAATCCTCCAATGACTTTCATTGCTA 662 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592574908366320