Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cylicostephanus_20goldi_20[genbank_20GCA_5F000951155.1_202014-10-12] 154,509 sequences; 173,362,437 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq7565 102 7e-17 >seq7565 Length=2537 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 || ||||||| || ||||| || ||||| ||||||||| || ||||| ||||||| Sbjct 18 ACTAAGTGGAGGGTCGACTCCTTCTGAATATTGTAATCGGACAATGTGCGACCATCCTCG 77 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || || || | || | |||||||| || || || || || || |||||| Sbjct 78 AGCTGCTTGCCGGCAAAAATCAATCGCTGCTGGTCTGGGGGAATTCCTTCTTTGTCTTGG 137 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | ||| | ||| || | | ||| || || | ||| | ||| || Sbjct 138 ATCTTCGCCTTCACATTTTCAATGGTATCTGAGGCCTCCACTTCCAGGGTTATCGTCTTT 197 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || |||| ||||| || ||||||||||| Sbjct 198 CCCGTCAACGTTTTGACGAAAATCTGCAT 226 Score = 86.0 bits (94), Expect = 5e-12 Identities = 105/141 (74%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 118599 CCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGT 118658 ||||| |||| | ||||||||||| ||||| || ||||| |||||| || || Sbjct 1683 CCAGCAAAGATCAATCGCTGCTGATCTGGAGGAATTCCCTCTTTGTCTTGGATCTTGGCC 1742 Query 118659 TTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAG 118717 || || | ||||| ||||| | ||| ||||| || | || | || |||||||| || Sbjct 1743 TTCACATTTTCGATTGTGTCAGAAGCT-TCGACTTCCAATGTGATAGTCTTGCCGGTAAG 1801 Query 118718 AGTTTTTACAAAAATCTGCAT 118738 |||||||||||| |||||||| Sbjct 1802 AGTTTTTACAAAGATCTGCAT 1822 Score = 82.4 bits (90), Expect = 7e-11 Identities = 99/132 (75%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 118608 ATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGT 118667 ||||| ||||||||||| ||||| || || |||||||| || || || || | | Sbjct 2027 ATGAGTCGCTGCTGATCTGGAGGAATTCCTTCCTTGTCCTGGATCTTAGCCTTGACATTT 2086 Query 118668 TCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 118726 |||| ||||| | |||| ||||| || | || | || |||||||| || |||||||| Sbjct 2087 TCGATTGTGTCGGATGCT-TCGACTTCAAGTGTGATAGTCTTGCCGGTGAGTGTTTTTAC 2145 Query 118727 AAAAATCTGCAT 118738 ||||||||||| Sbjct 2146 GAAAATCTGCAT 2157 Score = 82.4 bits (90), Expect = 7e-11 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 118606 AGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCT 118665 |||| ||||| |||||||||||||| |||||||| |||||| ||| || || || | Sbjct 2330 AGATCAGACGTTGCTGATCGGGAGGAATGCCCTCTTTGTCTTGAATCTTGGCCTTGACAT 2389 Query 118666 GTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTA 118725 || | ||||| | ||| ||||||| ||| | ||| || || || || ||||||| Sbjct 2390 TCTCAATAGTGTCGGAAGCCTCAACCTCGAGGGTAATCGTCTTTCCAGTAAGCGTTTTTA 2449 Query 118726 CAAAAATCTGCAT 118738 | || || ||||| Sbjct 2450 CGAAGATTTGCAT 2462 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433013463328228