Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cylicostephanus_20goldi_20[genbank_20GCA_5F000951155.1_202014-10-12] 154,509 sequences; 173,362,437 total letters Query= NC_003444.1 Length=37074 Score E Sequences producing significant alignments: (Bits) Value seq10918 556 3e-154 >seq10918 Length=2235 Score = 556 bits (616), Expect = 3e-154 Identities = 341/363 (94%), Gaps = 0/363 (0%) Strand=Plus/Minus Query 32676 TTTGTGCAGAAAGCATCACGACGAGCTGCATGCGGATACCGTGGCATTTGAAGAGAAGTA 32735 ||||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||| Sbjct 2235 TTTGTGCAGAAAGCATCACAACGAGCTGCATACGGATACAGTGGCATTTGAAGAGAAGTA 2176 Query 32736 TGGCTCTCAGCTGGAGCTGATATTTCGTTTTATCGATCGTGCGCTGGCAATTGGCGTATT 32795 |||||| || ||||||||||||||||||||||||||||| |||||||||||||||||| | Sbjct 2175 TGGCTCCCAACTGGAGCTGATATTTCGTTTTATCGATCGCGCGCTGGCAATTGGCGTACT 2116 Query 32796 GGCGTAAGTGGAGAACGAGCATGAACCTTGAAGCCTTACCAAAATATTACTCCCCAAAAT 32855 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2115 GGCGTAAGTGGAGAACGAGCATGAACCTTGAAGCCTTACCAAAATATTACTCCCCAAAAT 2056 Query 32856 CTCCAAAATTGAGCGATGACGCACCGGCGACAGGCTCAGGTGGTTTAACGATTACGGATG 32915 |||||||||||||||||||||| || ||||||||| | ||| ||||||| |||||||||| Sbjct 2055 CTCCAAAATTGAGCGATGACGCTCCAGCGACAGGCACCGGTTGTTTAACAATTACGGATG 1996 Query 32916 TGATGGCTGCGCAGGGGATGGTGCAGTCGAAAGCACCGCTTGGGTTTGCCTTATTCCTGG 32975 | ||||| ||||||||||||||||||||||||||||| |||||||| |||||||| |||| Sbjct 1995 TAATGGCAGCGCAGGGGATGGTGCAGTCGAAAGCACCACTTGGGTTGGCCTTATTTCTGG 1936 Query 32976 CAAAAGTTGGTGTTCAGGATCCTCAATTTGCGATTGAAGGTCTGCTCAATTACGCGATGG 33035 ||||||||||||||||||| ||||| |||||||||||||| ||||| ||||||||||||| Sbjct 1935 CAAAAGTTGGTGTTCAGGACCCTCAGTTTGCGATTGAAGGCCTGCTAAATTACGCGATGG 1876 Query 33036 CAC 33038 ||| Sbjct 1875 CAC 1873 Score = 515 bits (570), Expect = 9e-142 Identities = 368/422 (87%), Gaps = 2/422 (0%) Strand=Plus/Minus Query 33281 GAAGTCAGCACAGCGTGCAGAGGGTGTAAGGGTAAAGGTATTGTCCTGGATGAAAAAAGG 33340 |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| Sbjct 1717 GAAGTCAGCACAGCGTGCAGAGGGTGTAAGGGTAAAGGGATTGTTCTGGATGAAAAAAGA 1658 Query 33341 ACCCGGCTTCATGGCACACCTGTTTATAAGATTTGTGGGCGTTGCAATGGAAACCGGTTT 33400 |||||| |||||||| ||| || |||||||||||||||||||| ||||||||||||||| Sbjct 1657 ACCCGGTTTCATGGCGTACCGGTATATAAGATTTGTGGGCGTTGTAATGGAAACCGGTTT 1598 Query 33401 AGCCGTTTACCAACCACACTGGCGCGGCATCATGTCCAGAAGCTGGTACCAGACCTGACA 33460 || |||||||| ||||| ||||| || | |||||||||||||||||||||||||||||| Sbjct 1597 AGTCGTTTACCGACCACGCTGGCACGACGTCATGTCCAGAAGCTGGTACCAGACCTGACC 1538 Query 33461 GATTATCAGTGGTACAAAGGATATGCAGATGTCATTGATAAACTGGTTACAAAGTGCTGG 33520 |||||||||||||| || || ||||| || ||||||| ||||||||| |||||||||||| Sbjct 1537 GATTATCAGTGGTATAAGGGGTATGCGGACGTCATTGGTAAACTGGTAACAAAGTGCTGG 1478 Query 33521 CAGGAAGAAGCATATGCTGAGGCGCAATTAAGAAAAGTGACGAGATAAATGATTTTCGCC 33580 |||||||||||||| || || |||||||| || || |||||||||||||||||||| || Sbjct 1477 CAGGAAGAAGCATACGCGGAAGCGCAATTGAGGAAGGTGACGAGATAAATGATTTTTGCT 1418 Query 33581 GAAGATGGCGACATAATGCTTGCATTTTTCAAAAAATATGGATAAGATTTTTCCAACGAT 33640 |||||||||||||| ||| ||||||||||||||||| |||||||||||||| ||||||| Sbjct 1417 GAAGATGGCGACATGATGTTTGCATTTTTCAAAAAACATGGATAAGATTTTCTCAACGAT 1358 Query 33641 GGGCTTTGTATGTCTACCGTT--GATAAGATTTAAGAACCCGCCGCTGAGCGGGtttttt 33698 ||||||||| | || |||| || || | | | ||||||| | ||||||||||| Sbjct 1357 GGGCTTTGTGTATCCGACGTTTAGAAAAAAGTAGAAAACCCGCTTATAAGCGGGTTTTTG 1298 Query 33699 tG 33700 || Sbjct 1297 TG 1296 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 118297748977688