Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cylicostephanus_20goldi_20[genbank_20GCA_5F000951155.1_202014-10-12] 154,509 sequences; 173,362,437 total letters Query= NC_004914.3 Length=62706 Score E Sequences producing significant alignments: (Bits) Value seq17020 1049 0.0 >seq17020 Length=1896 Score = 1049 bits (1162), Expect = 0.0 Identities = 730/819 (89%), Gaps = 15/819 (2%) Strand=Plus/Plus Query 28004 TTTACATCCACTTCAACACTGCTCAGGTCTTTATCAATTTCACCCTCAATTCTTACTTTG 28063 |||||||||| |||||||||| ||||||||||||||| ||||||||| ||| |||| || Sbjct 8 TTTACATCCAGTTCAACACTGTTCAGGTCTTTATCAAGTTCACCCTCGATTATTACCTTA 67 Query 28064 TCTTTCGGAGAAACATTCTGCCCGGCCCATATGCTGTCATCGATATCCGTGACAATTGTC 28123 |||| |||||| ||||||||||||||||||| || |||||||||||||||||||| || Sbjct 68 TCTTCCGGAGACACATTCTGCCCGGCCCATACACTTTCATCGATATCCGTGACAATGGTT 127 Query 28124 CCGCTATTGTCACGAAACTCATAACGTTCATCACCCACTTTTTTAACGATGCTCCCTTCA 28183 |||||| |||| |||||||||||||| |||||||||| ||||||||||||| ||||||| Sbjct 128 CCGCTACTGTCGCGAAACTCATAACGATCATCACCCAATTTTTTAACGATGTGCCCTTCA 187 Query 28184 AGGATAACCCATGCATCATCCTTCAGTTCTTTTGCCTGCGCTACTGTTG---AACGCTCT 28240 |||||||||||||| || |||||| |||||||||||||| ||||||||| |||||||| Sbjct 188 AGGATAACCCATGCCTCGTCCTTCTGTTCTTTTGCCTGCACTACTGTTGTTGAACGCTCT 247 Query 28241 GCTTCAGGCCCTTGGAAACCGCCCTGCTGTGCAAAAGCGCCAAAAGACACACCAGAAATA 28300 ||||||| ||| | ||||| ||||| ||||||||| ||||||||||||| | |||| | Sbjct 248 GCTTCAGACCCCAGAAAACCTCCCTGTTGTGCAAAAACGCCAAAAGACACGCAGGAAAAA 307 Query 28301 AGTGCTGCAATCAATACCTTTTTCATTCATAGTCCTCTTTCAGAGATGAACATTCAAACA 28360 || ||||| || ||||| ||||||||| || |||||||| ||| || ||||| | || Sbjct 308 AGGGCTGCGATTAATACTTTTTTCATT-ATCGTCCTCTTCAAGAAATTAACATGAACACT 366 Query 28361 -GCATTTTCAGTATGGTAAAGCGCGGGTGCGTTGAGGATGCCTGACACATCAGAGGTGGC 28419 ||||| ||| || |||| |||||||||||||||||||||||||||||||||||||| Sbjct 367 TGCATTG-CAGCATA-TAAAATGCGGGTGCGTTGAGGATGCCTGACACATCAGAGGTGGC 424 Query 28420 GGGAGATTACTCCCCCGCTTGGTCTCTTACTTCTCAGATTCGTAGTCTACGAAGACAGCG 28479 | | |||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 425 GAGGGATTTCTCCCTCGCCTGGTCTCTTACTTCTCAGATTCGTAGTCTACGAAGACAGCG 484 Query 28480 ACCTCCGTCTGACCGGTTCGGATTCGCACCTCGCAGAGGTCTTTCCTCGTTACCAGTGCC 28539 ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 485 ACCTCCGTCTGGCCGGTTCGGATTCGTACCTCGCAGAGGTCTTTCCTCGTTACCAGTGCC 544 Query 28540 GTCACTATGACGGTTAAACAGATGACGATCAGGGCGATTAACATCGCCTTTTGCTGCTTC 28599 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 545 GTCACTATGACGGTTAAACAGATGACGATCAGGGCGATTAACATCGCCTTTTGCTGCTTC 604 Query 28600 ATAGCCTGCTTCTCCTTGCCTTTCGGCACGTAAGAGGCTAACCTACATGT---GTTCAGC 28656 ||||||||||||||||||||||||||| ||||||||||||||||| || | ||| | Sbjct 605 ATAGCCTGCTTCTCCTTGCCTTTCGGCTCGTAAGAGGCTAACCTAGATTTACCGTT---C 661 Query 28657 ATGGATTGAGCCTCAGATTAATGTTAAGCGTCTTGCCGGACGCGTAATGTTAACTGGGGC 28716 || ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| Sbjct 662 ATAGATTGAGCCTCAGATTAATGTTAAGCGTCTTGCAGGACGTGTAATGTTAACTGGGGC 721 Query 28717 TTTTCTCTATCTGCCGT-TGGTGTTCATGCCCGAGGCAGATAGCCTCAAGCACCCGCAGC 28775 |||||||| |||||| | |||| ||||||||||||||| ||||||||||||||||||| Sbjct 722 TTTTCTCTGTCTGCCTTACGGTG-GCATGCCCGAGGCAGACAGCCTCAAGCACCCGCAGC 780 Query 28776 AATTCTACTTAACTCTCCTTTTCCCGCAAACCGTTTTTA 28814 ||||||||||||||||| ||| |||||||||||||||| Sbjct 781 AATTCTACTTAACTCTCGCTTTACCGCAAACCGTTTTTA 819 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 200156777995383