Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cylicostephanus_20goldi_20[genbank_20GCA_5F000951155.1_202014-10-12] 154,509 sequences; 173,362,437 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq7565 129 1e-24 seq91314 91.5 3e-13 seq67160 89.7 1e-12 seq64323 84.2 5e-11 >seq7565 Length=2537 Score = 129 bits (142), Expect = 1e-24 Identities = 115/144 (80%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || ||||||||||| | | || ||||| ||||| |||||||| |||||||||||||| Sbjct 674 TTACCAGCAAAAATCAAACGTTGCTGATCTGGAGGAATTCCTTCCTTATCCTGAATCTTG 733 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 ||||| |||||||| | ||||||| | ||| || || | ||| |||||||| || ||| Sbjct 734 GCTTTCACATTTTCAATGGTATCGGATGCTTCGACTTCCAATGTGATAGTCTTGCCCGTA 793 Query 104537 AGTGTTTTTACAAATATCTGCATT 104560 || || || ||||| ||||||||| Sbjct 794 AGAGTCTTCACAAAGATCTGCATT 817 Score = 120 bits (132), Expect = 7e-22 Identities = 111/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 || |||||||| || | ||| ||||| ||||| |||||||| || ||||| ||||| || Sbjct 2018 CCTGCAAAAATGAGTCGCTGCTGATCTGGAGGAATTCCTTCCTTGTCCTGGATCTTAGCC 2077 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 || |||||||| | || ||| | ||| || || ||||| |||||||| || || ||| Sbjct 2078 TTGACATTTTCGATTGTGTCGGATGCTTCGACTTCAAGTGTGATAGTCTTGCCGGTGAGT 2137 Query 104540 GTTTTTACAAATATCTGCATT 104560 |||||||| || ||||||||| Sbjct 2138 GTTTTTACGAAAATCTGCATT 2158 Score = 118 bits (130), Expect = 2e-21 Identities = 161/225 (72%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 104336 CCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGA 104395 ||||| || | ||| |||| || | || || || ||||||||||| || || || | Sbjct 3 CCTCTAAGACGAAGGACTAAGTGGAGGGTCGACTCCTTCTGAATATTGTAATCGGACAAT 62 Query 104396 GTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATT 104455 || | ||| || || || || || || |||||||| | | ||| || || || || ||| Sbjct 63 GTGCGACCATCCTCGAGCTGCTTGCCGGCAAAAATCAATCGCTGCTGGTCTGGGGGAATT 122 Query 104456 CCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCT 104515 |||||||| || || ||||| || || |||||||| | |||||| | || || || Sbjct 123 CCTTCTTTGTCTTGGATCTTCGCCTTCACATTTTCAATGGTATCTGAGGCCTCCACTTCC 182 Query 104516 AGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || || || ||||| || || | ||||| || || ||||||||| Sbjct 183 AGGGTTATCGTCTTTCCCGTCAACGTTTTGACGAAAATCTGCATT 227 Score = 111 bits (122), Expect = 4e-19 Identities = 109/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 |||||||| || | | ||| ||||| ||||| ||||| ||||| || || ||||| || Sbjct 1683 CCAGCAAAGATCAATCGCTGCTGATCTGGAGGAATTCCCTCTTTGTCTTGGATCTTGGCC 1742 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 || |||||||| | || || || ||| || || | ||| |||||||| || ||||| Sbjct 1743 TTCACATTTTCGATTGTGTCAGAAGCTTCGACTTCCAATGTGATAGTCTTGCCGGTAAGA 1802 Query 104540 GTTTTTACAAATATCTGCATT 104560 ||||||||||| ||||||||| Sbjct 1803 GTTTTTACAAAGATCTGCATT 1823 >seq91314 Length=789 Score = 91.5 bits (100), Expect = 3e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 ||||||||||| | | ||| ||||| || || |||||||| || ||||| ||||| || Sbjct 166 CCAGCAAAAATCAATCGCTGCTGATCTGGGGGGATTCCTTCCTTGTCCTGGATCTTAGCC 225 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 || || || || | ||| || | ||| || || ||||| || ||||| ||||| | Sbjct 226 TTGACGTTCTCGATGGTGTCAGATGCTTCGACTTCCAGTGTGATGGTCTTCCCAGTCAAA 285 Query 104540 GTTTTTACAAATATCTGCAT 104559 || || ||||| |||||||| Sbjct 286 GTCTTCACAAAAATCTGCAT 305 >seq67160 Length=966 Score = 89.7 bits (98), Expect = 1e-12 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| ||||| || | |||||| ||||| | || ||||| || |||||||| || ||| Sbjct 456 ATTCCTCCTCTAAGGCGAAGTACAAGATGGAGAGTTGATTCCTTTTGAATATTGTAATCA 397 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCC 104421 || || |||| |||||||||||||||||||| Sbjct 396 GACAGCGTTCGTCCGTCTTCTAGTTGTTTTCC 365 >seq64323 Length=992 Score = 84.2 bits (92), Expect = 5e-11 Identities = 86/112 (77%), Gaps = 3/112 (3%) Strand=Plus/Minus Query 268915 TCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAA 268974 |||||| || || | |||||||| | | ||| || || ||||| || ||||| ||||| Sbjct 875 TCAAGAAGTCCAAGTCCCTGAAGCTCGCTTTTTCTATGGTTTCCAAATTGCTATCGAAAA 816 Query 268975 TATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATAT---AGATGAT 269023 ||| |||||||||||||||||| | | || || || ||||| ||||||| Sbjct 815 TATCCATTCAGAGATGTACAGTAAACTTATTGAAACATATATTCGAGATGAT 764 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1149119038115372