Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cylicostephanus_20goldi_20[genbank_20GCA_5F000951155.1_202014-10-12] 154,509 sequences; 173,362,437 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq67160 105 6e-18 seq7565 105 6e-18 seq120499 96.9 3e-15 seq91314 96.9 3e-15 >seq67160 Length=966 Score = 105 bits (116), Expect = 6e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 94865 TTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTT 94924 || ||| ||||||| | ||| ||||||||||| || || ||||||||||| | || ||| Sbjct 597 TTACCGGCAAAGATGAGTCTCTGCTGATCTGGTGGGATGCCTTCTTTGTCTTGGATCTTT 538 Query 94925 GCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTA 94984 |||||||| | | |||||| | ||||| |||| ||||||||| |||||||| Sbjct 537 GCCTTGACATTTTCAATAGTGTCCGAAGCCTCGACTTCAAGCGTGATGGTCTTTCCAGTT 478 Query 94985 AGAGTTTTCACAAAGATCTGCAT 95007 | || || |||||||| ||||| Sbjct 477 AAGGTCTTGACAAAGATTTGCAT 455 >seq7565 Length=2537 Score = 105 bits (116), Expect = 6e-18 Identities = 106/138 (77%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 94872 CAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGA 94931 ||||||| |||| |||||||||||||| || ||||| ||||| | || || ||||||| Sbjct 375 CAAAGATCAATCGCTGCTGATCTGGAGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGA 434 Query 94932 CGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTT 94991 || ||| ||||| | ||||| |||| |||||||| || ||||||||||| | Sbjct 435 CGTTCTCGATGGTGTCGGATGCTTCGACTTCAAGGGTGATGGTCTTCCCAGTAAGAGTCT 494 Query 94992 TCACAAAGATCTGCATGC 95009 | || ||||| ||||||| Sbjct 495 TGACGAAGATTTGCATGC 512 Score = 102 bits (112), Expect = 7e-17 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 94872 CAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGA 94931 ||||||| |||| ||||||||||||||||| || |||||||| | || || ||||| | Sbjct 1687 CAAAGATCAATCGCTGCTGATCTGGAGGAATTCCCTCTTTGTCTTGGATCTTGGCCTTCA 1746 Query 94932 CGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTT 94991 | ||| ||||||| ||||| || | ||||| || || || |||||||||| Sbjct 1747 CATTTTCGATTGTGTCAGAAGCTTCGACTTCCAATGTGATAGTCTTGCCGGTAAGAGTTT 1806 Query 94992 TCACAAAGATCTGCAT 95007 | |||||||||||||| Sbjct 1807 TTACAAAGATCTGCAT 1822 Score = 84.2 bits (92), Expect = 2e-11 Identities = 154/226 (68%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 94782 CTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCA 94841 ||||||| | || | || ||||| | || || ||||| || | || |||||| || Sbjct 1 CTCCTCTAAGACGAAGGACTAAGTGGAGGGTCGACTCCTTCTGAATATTGTAATCGGACA 60 Query 94842 TAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAA 94901 ||| |||||| ||||| || ||| |||| || |||| ||||| ||||| |||| Sbjct 61 ATGTGCGACCATCCTCGAGCTGCTTGCCGGCAAAAATCAATCGCTGCTGGTCTGGGGGAA 120 Query 94902 TACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGT 94961 | ||||||||||| | || || ||||| || | | || || | | || || | Sbjct 121 TTCCTTCTTTGTCTTGGATCTTCGCCTTCACATTTTCAATGGTATCTGAGGCCTCCACTT 180 Query 94962 CAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | | || || || ||||| || | ||||| || || |||||||| Sbjct 181 CCAGGGTTATCGTCTTTCCCGTCAACGTTTTGACGAAAATCTGCAT 226 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 94872 CAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGA 94931 ||||||| | | ||||||||| |||||||| || |||||||| | ||| || ||||||| Sbjct 2327 CAAAGATCAGACGTTGCTGATCGGGAGGAATGCCCTCTTTGTCTTGAATCTTGGCCTTGA 2386 Query 94932 CGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTT 94991 | | | |||||| | || || || | || || || ||||||||||| |||| Sbjct 2387 CATTCTCAATAGTGTCGGAAGCCTCAACCTCGAGGGTAATCGTCTTTCCAGTAAGCGTTT 2446 Query 94992 TCACAAAGATCTGCAT 95007 | || ||||| ||||| Sbjct 2447 TTACGAAGATTTGCAT 2462 >seq120499 Length=638 Score = 96.9 bits (106), Expect = 3e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 94872 CAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGA 94931 ||||||| |||| ||||||||||||||||| ||||| ||||| | || || ||||||| Sbjct 300 CAAAGATCAATCGCTGCTGATCTGGAGGAATTCCTTCCTTGTCTTGGATCTTGGCCTTGA 359 Query 94932 CGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTT 94991 || ||| ||||| | ||||| |||| || ||||| || || ||||| || | Sbjct 360 CGTTCTCGATGGTGTCCGAAGCTTCGACTTCAAGGGTAATGGTCTTCCCGGTAAGGGTCT 419 Query 94992 TCACAAAGATCTGCATGC 95009 |||| || || ||||||| Sbjct 420 TCACGAAAATTTGCATGC 437 Score = 86.0 bits (94), Expect = 6e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 94875 AGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGG 94934 |||| |||| |||||||||||| ||||| ||||| ||||| | ||| || ||||||||| Sbjct 1 AGATCAATCGTTGCTGATCTGGGGGAATTCCTTCCTTGTCCTGAATCTTGGCCTTGACGT 60 Query 94935 CGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCA 94994 | | ||||| | ||||| |||| ||||| || || || ||||| || || | Sbjct 61 TCTCAATGGTGTCGGATGCTTCGACTTCAAGAGTGATAGTCTTCCCGGTAAGGGTCTTGA 120 Query 94995 CAAAGATCTGCATGC 95009 | || || ||||||| Sbjct 121 CGAAAATTTGCATGC 135 >seq91314 Length=789 Score = 96.9 bits (106), Expect = 3e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 94872 CAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGA 94931 |||| || |||| ||||||||||| || || ||||| ||||| | || || ||||||| Sbjct 170 CAAAAATCAATCGCTGCTGATCTGGGGGGATTCCTTCCTTGTCCTGGATCTTAGCCTTGA 229 Query 94932 CGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTT 94991 || ||| ||||||| ||||| || | |||||||| || ||||| | ||| | Sbjct 230 CGTTCTCGATGGTGTCAGATGCTTCGACTTCCAGTGTGATGGTCTTCCCAGTCAAAGTCT 289 Query 94992 TCACAAAGATCTGCATGC 95009 ||||||| |||||||||| Sbjct 290 TCACAAAAATCTGCATGC 307 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447425387187240