Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cylicostephanus_20goldi_20[genbank_20GCA_5F000951155.1_202014-10-12] 154,509 sequences; 173,362,437 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq7565 98.7 9e-16 seq67160 91.5 1e-13 >seq7565 Length=2537 Score = 98.7 bits (108), Expect = 9e-16 Identities = 101/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | || |||||||| | |||||||| |||||||| |||| || ||||| Sbjct 2463 AATGCAAATCTTCGTAAAAACGCTTACTGGAAAGACGATTACCCTCGAGGTTGAGGCTTC 2404 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 |||||| || ||| | ||||| |||||| |||||||| ||||| ||||||||||| Sbjct 2403 CGACACTATTGAGAATGTCAAGGCCAAGATTCAAGACAAAGAGGGCATTCCTCCCGATCA 2344 Query 24110 ACAGAGACTGAT 24121 || | ||||| Sbjct 2343 GCAACGTCTGAT 2332 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | || || ||||| || || ||||| |||| ||| | ||||| |||||| Sbjct 227 AATGCAGATTTTCGTCAAAACGTTGACGGGAAAGACGATAACCCTGGAAGTGGAGGCCTC 168 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 || ||||| || | || || ||||| ||||||||||| || || || || || Sbjct 167 AGATACCATTGAAAATGTGAAGGCGAAGATCCAAGACAAAGAAGGAATTCCCCCAGACCA 108 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| || |||||| | ||||||||| ||||| |||| | | | |||||| || Sbjct 107 GCAGCGATTGATTTTTGCCGGCAAGCAGCTCGAGGATGGTCGCACATTGTCCGATTACAA 48 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGT 24199 ||||| || || || || | || ||||| Sbjct 47 TATTCAGAAGGAGTCGACCCTCCACTTAGT 18 >seq67160 Length=966 Score = 91.5 bits (100), Expect = 1e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | ||||| || || ||||||||||| | || || | ||||||||||| Sbjct 454 AATGCAAATCTTTGTCAAGACCTTAACTGGAAAGACCATCACGCTTGAAGTCGAGGCTTC 513 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||| || || | ||||| |||||| |||||||||||||| || || ||||| Sbjct 514 GGACACTATTGAAAATGTCAAGGCAAAGATCCAAGACAAAGAAGGCATCCCACCAGATCA 573 Query 24110 ACAGAGACTGATTTACGGCGGCAAG 24134 |||||||| || | | ||| ||| Sbjct 574 GCAGAGACTCATCTTTGCCGGTAAG 598 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429126396788895