Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cylicostephanus_20goldi_20[genbank_20GCA_5F000951155.1_202014-10-12] 154,509 sequences; 173,362,437 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq10916 107 1e-18 seq140086 102 5e-17 seq7565 93.3 3e-14 >seq10916 Length=2236 Score = 107 bits (118), Expect = 1e-18 Identities = 70/77 (91%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| | Sbjct 1535 CTCTCTTTTCAAAGTTCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTC 1476 Query 20007 GGTAATATTTAGCCTTA 20023 | | |||||||| ||| Sbjct 1475 GCCAGTATTTAGCTTTA 1459 >seq140086 Length=552 Score = 102 bits (112), Expect = 5e-17 Identities = 121/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 6321 CCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACGAG 6380 || || || || ||||| |||||||| ||||| ||||| | | |||| ||||||||| Sbjct 531 CCAACCAAGTACTTCGGCTGCGAACTGGGCGCACAGACCAACTATGATGCGAAAAACGAG 472 Query 6381 CGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCTTT 6440 || | |||||| || ||| |||| || | || |||||||||||| | ||||| ||||| Sbjct 471 CGTTACATCGTGAATGGAGAGCATGACGCCGCGAAGCTGCAGGACATCCTTGATGGCTTC 412 Query 6441 ATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGAC 6484 || || || || || || | | |||||| || ||||| || Sbjct 411 ATCAAAAAATTCGTTCTATGCCCAGCATGCGAAAATCCGGAAAC 368 >seq7565 Length=2537 Score = 93.3 bits (102), Expect = 3e-14 Identities = 155/224 (69%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 38094 CCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAA 38153 ||||| | ||| | || || || || || |||||| |||||||||||||| ||||| Sbjct 3 CCTCTAAGACGAAGGACTAAGTGGAGGGTCGACTCCTTCTGAATATTGTAATCGGACAAT 62 Query 38154 ACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACG 38213 || | || || | || || |||||||| || | || || || || | ||| | Sbjct 63 GTGCGACCATCCTCGAGCTGCTTGCCGGCAAAAATCAATCGCTGCTGGTCTGGGGGAATT 122 Query 38214 CCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCT 38273 ||||||||||| || || ||||||||| | | |||||| || ||||| Sbjct 123 CCTTCTTTGTCTTGGATCTTCGCCTTCACATTTTCAATGGTATCTGAGGCCTCCACTTCC 182 Query 38274 AATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || || || || |||||||| ||||| ||||| |||||||| Sbjct 183 AGGGTTATCGTCTTTCCCGTCAACGTTTTGACGAAAATCTGCAT 226 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334316468149979