Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cylicostephanus_20goldi_20[genbank_20GCA_5F000951155.1_202014-10-12] 154,509 sequences; 173,362,437 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq89190 98.7 1e-15 seq72481 82.4 1e-10 >seq89190 Length=803 Score = 98.7 bits (108), Expect = 1e-15 Identities = 101/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 63173 ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCC 63232 ||||| | ||||| ||||| | || ||||| | | ||||||| ||||||||||| ||| Sbjct 296 ATATCTGCGTGCCAAGGTTCGAGATAGATGGCAAAAGCTCCAGGACGTTTGTTTCCACCC 237 Query 63233 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGAT 63292 ||||| | |||| ||| |||||||| || || | | ||| |||| || ||||| ||| Sbjct 236 TGATCCACATATCGAGCAGTGTTATTGTACACACGAAGCATAGGAACAAGCCCATTAGAT 177 Query 63293 GTACCATTGGTC 63304 || ||||| ||| Sbjct 176 GTGCCATTAGTC 165 >seq72481 Length=921 Score = 82.4 bits (90), Expect = 1e-10 Identities = 107/148 (72%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 63833 TTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCCGGATGTTGTGTA 63892 ||||| | ||| ||||| ||||| | ||| || || ||||||||||| |||||||| || Sbjct 515 TTGTGCAAATTCGATACAGCTATGCGAGCAGCAAGTATGGCATAATCAGGATGTTGGGTG 574 Query 63893 GTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACACCATTA 63952 || | ||||| |||| || |||| | ||||| || || || || || || || Sbjct 575 GTCATCGAAGCTGCGGTTTCTGCCGCCAAGTTATCCAACTCCACTGTGGTCACTCCTTTG 634 Query 63953 TATATTCCTTGGATAACCTTCATAGCTA 63980 |||| |||| || || ||||| |||| Sbjct 635 TATAATCCTCCAATGACTTTCATTGCTA 662 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 632408226916400