Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cylicostephanus_20goldi_20[genbank_20GCA_5F000951155.1_202014-10-12] 154,509 sequences; 173,362,437 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq67160 123 5e-23 seq120499 116 7e-21 seq7565 113 8e-20 seq91314 104 4e-17 >seq67160 Length=966 Score = 123 bits (136), Expect = 5e-23 Identities = 121/155 (78%), Gaps = 1/155 (1%) Strand=Plus/Minus Query 68309 TTCT-AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGT 68367 |||| |||| ||| ||||| || |||||||| || || || ||||| |||||||| |||| Sbjct 608 TTCTGAACTACTTACCGGCAAAGATGAGTCTCTGCTGATCTGGTGGGATGCCTTCTTTGT 549 Query 68368 CTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGG 68427 |||| |||||||||||||| || || ||||| | | || ||||| | ||||||| Sbjct 548 CTTGGATCTTTGCCTTGACATTTTCAATAGTGTCCGAAGCCTCGACTTCAAGCGTGATGG 489 Query 68428 TTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 | ||||| || | ||||||||| || || |||||| Sbjct 488 TCTTTCCAGTTAAGGTCTTGACAAAGATTTGCATT 454 Score = 100 bits (110), Expect = 5e-16 Identities = 96/123 (78%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 68315 CTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAAT 68374 |||||| || ||||| || |||| ||| || || || || |||||||| ||||||||||| Sbjct 294 CTGCTTACCTGCGAAGATAAGTCGTTGCTGATCTGGAGGGATGCCTTCTTTGTCTTGAAT 235 Query 68375 CTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCC 68434 || |||||||| |||||||| || | | ||||||||||| |||||||| || || Sbjct 234 TTTAGCCTTGACATTTTCGATGGTATCAGAAGCTTCTACTTCCAGAGTGATGGTCTTCCC 175 Query 68435 CGT 68437 || Sbjct 174 TGT 172 >seq120499 Length=638 Score = 116 bits (128), Expect = 7e-21 Identities = 112/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 68318 CTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTT 68377 ||| || || || || | || || || || || ||||| |||||||||||||| ||||| Sbjct 292 CTTACCAGCAAAGATCAATCGCTGCTGATCTGGAGGAATTCCTTCCTTGTCTTGGATCTT 351 Query 68378 TGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGT 68437 ||||||||| |||||||||||| | | ||| ||||| | ||| ||||| || || || Sbjct 352 GGCCTTGACGTTCTCGATGGTGTCCGAAGCTTCGACTTCAAGGGTAATGGTCTTCCCGGT 411 Query 68438 GAGGGTCTTGACGAATATCTGCAT 68461 |||||||| ||||| || ||||| Sbjct 412 AAGGGTCTTCACGAAAATTTGCAT 435 Score = 114 bits (126), Expect = 2e-20 Identities = 101/126 (80%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 68336 TCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGAT 68395 || ||| || || || ||||| ||||||||||| |||||||| ||||||||| ||| || Sbjct 8 TCGTTGCTGATCTGGGGGAATTCCTTCCTTGTCCTGAATCTTGGCCTTGACGTTCTCAAT 67 Query 68396 GGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATAT 68455 |||||| | || ||| ||||| | ||||| || || || || |||||||||||||| || Sbjct 68 GGTGTCGGATGCTTCGACTTCAAGAGTGATAGTCTTCCCGGTAAGGGTCTTGACGAAAAT 127 Query 68456 CTGCAT 68461 ||||| Sbjct 128 TTGCAT 133 >seq7565 Length=2537 Score = 113 bits (124), Expect = 8e-20 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 || || || || | || || || || || || || ||||||||||| || ||||| ||| Sbjct 371 CCAGCAAAGATCAATCGCTGCTGATCTGGAGGGATTCCTTCCTTGTCCTGGATCTTGGCC 430 Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 |||||| |||||||||||| | || ||| ||||| | ||||||||| || || || || Sbjct 431 TTGACGTTCTCGATGGTGTCGGATGCTTCGACTTCAAGGGTGATGGTCTTCCCAGTAAGA 490 Query 68442 GTCTTGACGAATATCTGCAT 68461 ||||||||||| || ||||| Sbjct 491 GTCTTGACGAAGATTTGCAT 510 Score = 105 bits (116), Expect = 1e-17 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 || || || ||||||| || || || || ||||| ||||||||||| || ||||| ||| Sbjct 2018 CCTGCAAAAATGAGTCGCTGCTGATCTGGAGGAATTCCTTCCTTGTCCTGGATCTTAGCC 2077 Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 ||||| ||||| ||||| | || ||| ||||| | ||||| || || || ||||| Sbjct 2078 TTGACATTTTCGATTGTGTCGGATGCTTCGACTTCAAGTGTGATAGTCTTGCCGGTGAGT 2137 Query 68442 GTCTTGACGAATATCTGCATT 68462 || || ||||| ||||||||| Sbjct 2138 GTTTTTACGAAAATCTGCATT 2158 Score = 96.9 bits (106), Expect = 6e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 || || || || || | ||| || ||||| |||||||| || |||||||||||||| ||| Sbjct 2323 CCTGCAAAGATCAGACGTTGCTGATCGGGAGGAATGCCCTCTTTGTCTTGAATCTTGGCC 2382 Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 ||||| ||| || ||||| | | || || || | ||| || || ||||| || || Sbjct 2383 TTGACATTCTCAATAGTGTCGGAAGCCTCAACCTCGAGGGTAATCGTCTTTCCAGTAAGC 2442 Query 68442 GTCTTGACGAATATCTGCATTAT 68464 || || ||||| || |||||||| Sbjct 2443 GTTTTTACGAAGATTTGCATTAT 2465 >seq91314 Length=789 Score = 104 bits (114), Expect = 4e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 || || || || | || || || || || || || ||||||||||| || ||||| ||| Sbjct 166 CCAGCAAAAATCAATCGCTGCTGATCTGGGGGGATTCCTTCCTTGTCCTGGATCTTAGCC 225 Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 |||||| |||||||||||| | || ||| ||||||| |||||||| || || || | Sbjct 226 TTGACGTTCTCGATGGTGTCAGATGCTTCGACTTCCAGTGTGATGGTCTTCCCAGTCAAA 285 Query 68442 GTCTTGACGAATATCTGCAT 68461 ||||| || || |||||||| Sbjct 286 GTCTTCACAAAAATCTGCAT 305 Score = 95.1 bits (104), Expect = 2e-14 Identities = 88/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || ||||| |||||||| || ||||||||||| |||||||| ||||| ||| Sbjct 602 CCACCACGGAGTCGCAAAACCAAGTGAAGTGTGGACTCTTTCTGGATGTTGTAATCCGAG 661 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGT 68346 ||||| | ||||| || | |||||| || || || || | | || |||||| Sbjct 662 AGTGTGCGGCCATCCTCAAGCTGCTTTCCTGCAAAAATAATTTTTAGTTGGT 713 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 919842413057480