Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cylicostephanus_20goldi_20[genbank_20GCA_5F000951155.1_202014-10-12] 154,509 sequences; 173,362,437 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq7565 118 2e-21 seq91314 102 2e-16 seq120499 89.7 1e-12 >seq7565 Length=2537 Score = 118 bits (130), Expect = 2e-21 Identities = 115/147 (78%), Gaps = 6/147 (4%) Strand=Plus/Plus Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATT 288387 || || || ||||||| ||||| ||| ||||| |||||||| ||||||||||| Sbjct 1386 TTACCAGCAAAGATCAATCGCTGCTGA---TCTGGAGGAATTCCTTCCTTATCCTGGATC 1442 Query 288388 TTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCG 288447 || |||||||| || || || | |||| | ||| ||||| || ||||| |||||||| Sbjct 1443 TTAGCTTTCACATTCTCAATTGTATCGGATGCTTCAACTTCCAGGGTGATGGTCTTCCCA 1502 Query 288448 GTCAGAGTCTTGACGAATATCTGCATT 288474 ||||||||||| ||||| ||||||||| Sbjct 1503 GTCAGAGTCTTCACGAAGATCTGCATT 1529 Score = 105 bits (116), Expect = 2e-17 Identities = 141/195 (72%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || ||||| || |||| | ||||| || || || | || || || || || Sbjct 36 TCCTTCTGAATATTGTAATCGGACAATGTGCGACCATCCTCGAGCTGCTTGCCGGCAAAA 95 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 |||| ||||| || |||||| ||||||||||| || ||||| ||||| ||||| Sbjct 96 ATCAATCGCTGCTGG---TCTGGGGGAATTCCTTCTTTGTCTTGGATCTTCGCCTTCACA 152 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 ||||| || | ||| | || ||||| || || |||||||| || |||| || ||| Sbjct 153 TTTTCAATGGTATCTGAGGCCTCCACTTCCAGGGTTATCGTCTTTCCCGTCAACGTTTTG 212 Query 288460 ACGAATATCTGCATT 288474 ||||| ||||||||| Sbjct 213 ACGAAAATCTGCATT 227 Score = 102 bits (112), Expect = 2e-16 Identities = 109/143 (76%), Gaps = 6/143 (4%) Strand=Plus/Plus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGG---GATTCCTTCTTTATCCTGGATTTTC 288390 || || ||||||| ||||| ||| ||||| ||||||||| || |||||||| || Sbjct 371 CCAGCAAAGATCAATCGCTGCTGA---TCTGGAGGGATTCCTTCCTTGTCCTGGATCTTG 427 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 || || ||||| || || | ||| | ||| ||||| || ||||| |||||||| || Sbjct 428 GCCTTGACGTTCTCGATGGTGTCGGATGCTTCGACTTCAAGGGTGATGGTCTTCCCAGTA 487 Query 288451 AGAGTCTTGACGAATATCTGCAT 288473 |||||||||||||| || ||||| Sbjct 488 AGAGTCTTGACGAAGATTTGCAT 510 Score = 84.2 bits (92), Expect = 5e-11 Identities = 73/91 (80%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| ||||||| ||| || ||||||| |||| ||||||||| ||||| || |||| Sbjct 1823 TCCACCACGGAGTCGAAGAACCAGATGAAGCGTGGATTCTTTTTGAATATTGTAATCGGA 1882 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCT 288336 | |||||||||||||| | || |||||| Sbjct 1883 CAATGTGCGTCCGTCTTCCAGCTGCTTTCCT 1913 >seq91314 Length=789 Score = 102 bits (112), Expect = 2e-16 Identities = 111/146 (76%), Gaps = 6/146 (4%) Strand=Plus/Plus Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATT 288387 || || || ||||||| ||||| ||| ||||| |||||||| ||||||||||| Sbjct 458 TTACCAGCAAAGATCAATCGCTGCTGA---TCTGGCGGAATTCCTTCCTTATCCTGGATC 514 Query 288388 TTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCG 288447 || |||||||| ||||| || | |||| | ||| ||||| | ||||| ||||| || Sbjct 515 TTGGCTTTCACATTTTCAATCGTATCGGATGCTTCGACTTCCAATGTGATTGTCTTGCCC 574 Query 288448 GTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| ||||| |||||||| Sbjct 575 GTAAGTGTCTTCACGAAGATCTGCAT 600 Score = 87.8 bits (96), Expect = 4e-12 Identities = 106/143 (74%), Gaps = 6/143 (4%) Strand=Plus/Plus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTC 288390 || || || |||| ||||| ||| |||||| |||||||| || |||||||| || Sbjct 166 CCAGCAAAAATCAATCGCTGCTGA---TCTGGGGGGATTCCTTCCTTGTCCTGGATCTTA 222 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 || || ||||| || || | || | ||| ||||| || ||||| |||||||| ||| Sbjct 223 GCCTTGACGTTCTCGATGGTGTCAGATGCTTCGACTTCCAGTGTGATGGTCTTCCCAGTC 282 Query 288451 AGAGTCTTGACGAATATCTGCAT 288473 | |||||| || || |||||||| Sbjct 283 AAAGTCTTCACAAAAATCTGCAT 305 >seq120499 Length=638 Score = 89.7 bits (98), Expect = 1e-12 Identities = 102/136 (75%), Gaps = 6/136 (4%) Strand=Plus/Plus Query 288341 AGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCA 288397 |||||| || || ||| |||||| |||||||| || ||||| || || || || | Sbjct 1 AGATCAATCGTTGCTGA---TCTGGGGGAATTCCTTCCTTGTCCTGAATCTTGGCCTTGA 57 Query 288398 CGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCT 288457 |||| || || | ||| | ||| ||||| || ||||| ||||||||||| || |||| Sbjct 58 CGTTCTCAATGGTGTCGGATGCTTCGACTTCAAGAGTGATAGTCTTCCCGGTAAGGGTCT 117 Query 288458 TGACGAATATCTGCAT 288473 ||||||| || ||||| Sbjct 118 TGACGAAAATTTGCAT 133 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177319101222102