Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cylicostephanus_20goldi_20[genbank_20GCA_5F000951155.1_202014-10-12] 154,509 sequences; 173,362,437 total letters Query= NC_011802.1 Length=41941 Score E Sequences producing significant alignments: (Bits) Value seq17020 506 5e-139 >seq17020 Length=1896 Score = 506 bits (560), Expect = 5e-139 Identities = 321/348 (92%), Gaps = 0/348 (0%) Strand=Plus/Plus Query 5092 ACAGGCTCGGCTTCCAGCGCTGCCAAAGCAATCCGTGCCACTTCCATTTGTTCGCCACGA 5151 || ||||| ||||||||| ||||| ||||||||||||| |||||||||||||||||| Sbjct 1253 ACTGGCTCTGCTTCCAGCAATGCCAGTGCAATCCGTGCCAGTTCCATTTGTTCGCCACGG 1312 Query 5152 GTAAGCCCGTTTTCAAGCGGATTTTTAATGAACAATTCAATACGTTCTTTGGTAATAGAA 5211 ||||| ||||| |||||||||||||||||||| ||||| ||||||||||||||||||||| Sbjct 1313 GTAAGTCCGTTATCAAGCGGATTTTTAATGAATAATTCGATACGTTCTTTGGTAATAGAA 1372 Query 5212 TTCATGCTATTTCACCTTAATCTCAACATTTCGCAGCTTTAGCTCTACTGGCAGGTCTGA 5271 ||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||| Sbjct 1373 TTCATGCTATTTCACCTTAATCTCAACATTTCGCAGCTTTAACTCTATTGGTAGGTCTGA 1432 Query 5272 CTTTCCTGTTAATGCTAATGCGAGATTTTCTGGGGTAATGAGAGCAGTTATTGCTTTCCC 5331 |||||||||||||||||||||||||||||| || ||||||||||||||||||| |||| | Sbjct 1433 CTTTCCTGTTAATGCTAATGCGAGATTTTCAGGAGTAATGAGAGCAGTTATTGTTTTCTC 1492 Query 5332 CATTGCCAGACGAATAATTATTCGTATTTCGCGATCGTCACATGCTCCTGGTCGAACGAT 5391 ||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| || Sbjct 1493 CATCGCCAGACGAATAATCATTCGTATTTCGCGATCGTCACATGCTCCTGGTCGAACAAT 1552 Query 5392 TGATATTTGTCCGTCCATATCACTCTCCTTTAATGCGAATCGCAGCGG 5439 |||||||||||||| ||| |||||||||||| |||||||| |||||| Sbjct 1553 TGATATTTGTCCGTTCATCTCACTCTCCTTTGATGCGAATGCCAGCGG 1600 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 133843573156174