Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cylicostephanus_20goldi_20[genbank_20GCA_5F000951155.1_202014-10-12] 154,509 sequences; 173,362,437 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq16225 140 1e-27 seq7565 111 6e-19 seq3302 104 9e-17 seq120499 84.2 9e-11 >seq16225 Length=1931 Score = 140 bits (154), Expect = 1e-27 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 451238 TTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAA 451297 |||||||| |||||||| || | |||||||| || || ||||| |||| || ||| | Sbjct 1526 TTTGCTCCGGAAGAAATCTCTGCGATGGTTCTGACGAAGATGAAGGAAATTGCTGAATCA 1585 Query 451298 TATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCA 451357 ||| |||| ||| | ||||||| | ||||| || ||||| ||||| || || Sbjct 1586 TATCTTGGAAAGGAAGTCAAGAATGCAGTTGTGACTGTGCCTGCTTACTTCAACGACGCT 1645 Query 451358 CAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATT 451417 || || || || || || ||||| ||| || |||||| |||||||| ||||||| || Sbjct 1646 CAGCGACAGGCCACGAAGGATGCTGGAACAATCGCTGGTCTAAATGTTGTTCGAATCATA 1705 Query 451418 AATGAACCTACAGCAGCTGCTCTAGCATATGGACT 451452 ||||||||||||||||| || | || ||||| || Sbjct 1706 AATGAACCTACAGCAGCAGCCATTGCTTATGGTCT 1740 >seq7565 Length=2537 Score = 111 bits (122), Expect = 6e-19 Identities = 160/226 (71%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | |||||||| ||||| |||| || || || || || || || || || | || Sbjct 227 AATGCAGATTTTCGTCAAAACGTTGACGGGAAAGACGATAACCCTGGAAGTGGAGGCCTC 168 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 |||| ||||||| | | || || || ||||| || ||||||||||| || || || Sbjct 167 AGATACCATTGAAAATGTGAAGGCGAAGATCCAAGACAAAGAAGGAATTCCCCCAGACCA 108 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 || || || ||||| | || || || || || ||||| | || ||| | ||||| || Sbjct 107 GCAGCGATTGATTTTTGCCGGCAAGCAGCTCGAGGATGGTCGCACATTGTCCGATTACAA 48 Query 391229 TATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGGA 391274 |||| | ||||| | || || |||||||| | | || |||||| Sbjct 47 TATTCAGAAGGAGTCGACCCTCCACTTAGTCCTTCGTCTTAGAGGA 2 Score = 100 bits (110), Expect = 1e-15 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | || || || || || || || || || ||||| || | || || ||| |||| Sbjct 817 AATGCAGATCTTTGTGAAGACTCTTACGGGCAAGACTATCACATTGGAAGTCGAAGCATC 758 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 |||| ||||||| | | ||| || ||||| |||||||||||||||||||| ||||| Sbjct 757 CGATACCATTGAAAATGTGAAAGCCAAGATTCAGGATAAGGAAGGAATTCCTCCAGATCA 698 Query 391169 ACAACGTTTAATTTT 391183 |||||||| ||||| Sbjct 697 GCAACGTTTGATTTT 683 Score = 91.5 bits (100), Expect = 6e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | || ||||| || || |||||||| || || || || || || |||||| |||| Sbjct 1529 AATGCAGATCTTCGTGAAGACTCTGACTGGGAAGACCATCACCCTGGAAGTTGAAGCATC 1470 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 |||| ||||| | | ||| || || || |||||||||||||||||||| ||||| Sbjct 1469 CGATACAATTGAGAATGTGAAAGCTAAGATCCAGGATAAGGAAGGAATTCCTCCAGATCA 1410 Query 391169 ACAACGTTTAATTTT 391183 || || || || || Sbjct 1409 GCAGCGATTGATCTT 1395 Score = 87.8 bits (96), Expect = 7e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | |||||||| |||||||| || || || ||||| || ||||| || ||| |||| Sbjct 2158 AATGCAGATTTTCGTAAAAACACTCACCGGCAAGACTATCACACTTGAAGTCGAAGCATC 2099 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 || | || ||| | | || || || || || ||||||||||||||||| ||||| Sbjct 2098 CGACACAATCGAAAATGTCAAGGCTAAGATCCAGGACAAGGAAGGAATTCCTCCAGATCA 2039 Query 391169 ACAACGTTTAATTTTCTCAGG 391189 || || | ||||| |||| Sbjct 2038 GCAGCGACTCATTTTTGCAGG 2018 >seq3302 Length=3241 Score = 104 bits (114), Expect = 9e-17 Identities = 190/278 (68%), Gaps = 3/278 (1%) Strand=Plus/Minus Query 451319 GATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGAT 451378 || || || || ||||| ||||| || ||||| || | ||||| ||||| ||||||||| Sbjct 2007 GACGCTGTCATCACTGTCCCCGCATACTTCAACGACTCCCAACGTCAAGCTACTAAAGAT 1948 Query 451379 GCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCT 451438 || ||| || | || | ||||| |||||||| || || ||||| || || |||||| Sbjct 1947 GCTGGAGCGATCTCAGGAATGAATGTACTTCGAATCATCAACGAACCCACTGCCGCTGCT 1888 Query 451439 CTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGAT 451498 | || || ||||| | || ||| | | || ||| ||| | | | || ||| Sbjct 1887 ATCGCCTACGGACTCGACAA---AAAGGGACAAGGAGAGCGCAATGTCCTCATCTTCGAT 1831 Query 451499 TTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTA 451558 ||||||| || || ||| || | || | || |||||||| | || ||||| Sbjct 1830 CTTGGTGGCGGTACCTTCGATGTCTCCATCCTAACCATCGAAGATGGAATCTTCGAAGTC 1771 Query 451559 AAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGA 451596 || | ||| ||| || || ||||| ||||| ||||| Sbjct 1770 AAATCCACCGCTGGAGACACCCATCTTGGAGGAGAAGA 1733 >seq120499 Length=638 Score = 84.2 bits (92), Expect = 9e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||||| || || || || || || ||||| |||||||| || ||| |||| Sbjct 133 ATGCAAATTTTCGTCAAGACCCTTACCGGGAAGACTATCACTCTTGAAGTCGAAGCATCC 74 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | |||||| | || || ||||| || |||||||||||||| || ||||| Sbjct 73 GACACCATTGAGAACGTCAAGGCCAAGATTCAGGACAAGGAAGGAATTCCCCCAGATCAG 14 Query 391170 CAACGTTTAAT 391180 ||||| || || Sbjct 13 CAACGATTGAT 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1971807175860972