Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cylicostephanus_20goldi_20[genbank_20GCA_5F000951155.1_202014-10-12] 154,509 sequences; 173,362,437 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq16225 113 3e-19 seq3302 96.9 3e-14 >seq16225 Length=1931 Score = 113 bits (124), Expect = 3e-19 Identities = 336/521 (64%), Gaps = 57/521 (11%) Strand=Plus/Minus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 || || || |||||||| |||| || || || || |||||||| || |||| | |||| Sbjct 1749 TTCTTGTCGAGACCATAAGCAATGGCTGCTGCTGTAGGTTCATTTATGATTCGAACAACA 1690 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || |||||||| ||| |||| ||||| || ||||| |||| || | ||||| || || Sbjct 1689 TTTAGACCAGCGATTGTTCCAGCATCCTTCGTGGCCTGTCGCTGAGCGTCGTTGAAGTAA 1630 Query 518285 GCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTTGT 518344 ||||| ||||| | ||| |||| | ||||| || |||| ||| | || ||| Sbjct 1629 GCAGGCACAGTCACAACTGCATTCTTGACTTCCTTTCCAAGATATGATTCAGCAATTTCC 1570 Query 518345 TTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGAATATTGCTTGGATTCATT- 518403 ||||| || | | || ||| | || |||| ||| || | | | |||||| ||| || Sbjct 1569 TTCATCTTCGTCAGAACCATCGCAGAGATTTCTTCCGGAGCAAACTGCTTGTCTTCCTTG 1510 Query 518404 ------TTGAT------ATGATACTT------------------CAAAATATGGTTT--- 518430 || | ||| ||| | |||||||| || Sbjct 1509 CCAACTTTAACGACAACATGCGGCTTGTTGTTCTTGTCGGAGACCTAAATATGGGTTTAC 1450 Query 518431 ATTACCAACATT----AAT-----------AACTTTAAATGGCCAGTATTTCATATCTGA 518475 | || || || ||| ||| || |||||||| || ||||| Sbjct 1449 AGAACTAAAATGGAAGAATTGCGACTGACAAACCTTGAATGGCCACAGCTTAATATCGTC 1390 Query 518476 TTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATT 518535 || ||| | | ||| || ||||| | |||||||||||| || |||||||||| || || Sbjct 1389 CTGTACAGTCTTGTCGTTGAAATCACGACCAATTAATCGCTTAGCATCAAAAACTGTGTT 1330 Query 518536 GGTTGGATTAATTG-CAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTC-----TGT 518589 ||||| || | ||| ||||| ||| || ||||| ||||||| | |||| | | Sbjct 1329 TTCAGGATTGATGGTCAG-TTGATTTTTTGCAGCATCACCAATCATACGTTCACCATTTT 1271 Query 518590 C-TCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCT 518629 | | || ||||| ||||||||| || || | ||||| ||| Sbjct 1270 CTTGTGAAAATGCAACATATGACGGGGTGATCCGATTTCCT 1230 >seq3302 Length=3241 Score = 96.9 bits (106), Expect = 3e-14 Identities = 193/284 (68%), Gaps = 4/284 (1%) Strand=Plus/Plus Query 518026 ATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCC 518085 ||| || ||||| ||||| | | || | ||| | || | | | |||| ||| | ||| Sbjct 1726 ATCGAAGTCTTCTCCTCCAAGATGGGTGTCTCCAGCGGTGGATTTGACTTCGAAGATTCC 1785 Query 518086 ATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTAC 518145 |||||| | | | | | ||||| ||| || ||||| | ||| || || || || Sbjct 1786 ATCTTCGATGGTTAGGATGGAGACATCGAAGGTACCGCCACCAAGATCGAAGATGAGGAC 1845 Query 518146 ATTCATTTCT--TTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGT 518203 ||| ||| ||||| ||||| || || || || || | |||||| ||||| ||| Sbjct 1846 ATTGCGCTCTCCTTGTCCC--TTTTTGTCGAGTCCGTAGGCGATAGCAGCGGCAGTGGGT 1903 Query 518204 TCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGT 518263 || || || |||| | ||||| | || | || ||| ||||||||||| ||||| Sbjct 1904 TCGTTGATGATTCGAAGTACATTCATTCCTGAGATCGCTCCAGCATCTTTAGTAGCTTGA 1963 Query 518264 CTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATC 518307 | ||| || ||||| || ||||| || ||||| || || || || Sbjct 1964 CGTTGGGAGTCGTTGAAGTATGCGGGGACAGTGATGACAGCGTC 2007 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3773155154467354