Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cylicostephanus_20goldi_20[genbank_20GCA_5F000951155.1_202014-10-12] 154,509 sequences; 173,362,437 total letters Query= NC_015263.1 Length=114768 Score E Sequences producing significant alignments: (Bits) Value seq13137 120 2e-22 >seq13137 Length=2089 Score = 120 bits (132), Expect = 2e-22 Identities = 475/724 (66%), Gaps = 47/724 (6%) Strand=Plus/Plus Query 54473 GATTTTATAAAATCGCCACTGAATTATACAGGTGGAAAATTTAAACTGTTGCCAAAAATA 54532 |||||| |||||| ||| | ||||||| || |||||| |||| | |||| ||||| Sbjct 936 GATTTTTTAAAATGTCCATTTAATTATATTGGAGGAAAACATAAAATTATGCCTCAAATA 995 Query 54533 ATGCCACTGTTTTACGAAGCAGAGA----CATTTATTGATTTGTTTGGTGGCGGTGGTAA 54588 | | |||| | ||| | | | ||||| ||||||| |||||||| || ||| Sbjct 996 -TATAAGAATTTTCCAAAGGATATAAGTACATTTGTTGATTTATTTGGTGGAGGATTTAA 1054 Query 54589 TGTTGGAATTAATTCTAAGAGT-GAAAAAATTATTATTAACGATAGAGAAAAAGTTGTAA 54647 |||||||||||| ||| | || ||||| ||| ||| || | || | || Sbjct 1055 TGTTGGAATTAACA-TAACTGCAGATAAAATCATTTATAATGACCAAATAACTCATTTAG 1113 Query 54648 TTGATTTTTTCAANNNNNNNNNAAAACTCTCGATAGA--AGATGTTCTTGAATCAATTAA 54705 | || || || || | |||| || |||||| | | | ||||| Sbjct 1114 TAGAATTATTTAAATATTTAG--ATACTCATAATTATTCAGATGTAATAAATTATATTAA 1171 Query 54706 AGGCTATATTGAAACTTATGATTTAAGTAAAG-TGAATCAAGAAGGTTTTTTAAAGATTA 54764 | | || ||| | |||||| | | |||| |||| ||||||| || ||||| ||| Sbjct 1172 ACATCAAATCGAAGCGTATGATATTAAAAAAGATGAAA-AAGAAGGATTCTTAAAATTTA 1230 Query 54765 GAAAAGATTACAATGCTTCAAAAGAAAAAGACCCATTAATGTTCTATACAATGCTAATGT 54824 || | |||| ||| ||||| | || | | || | || |||| | | | || Sbjct 1231 GAGATTATTATAAT----CAAAATCATAACAATCCTTTAGATT-TATATATTTTAATTGC 1285 Query 54825 ATTCT--TTTAATTATCAAATTAGATTTAATTCTAAAGGTGAATACAATATGCCATT-TG 54881 ||||| ||||||||||| |||||||||||| | || ||||| ||| |||| | || Sbjct 1286 ATTCTCATTTAATTATCAGATTAGATTTAATAATTCTGGAGAATATAAT-TGCCCTCATG 1344 Query 54882 GAAAAGACCGCAGTAGTTTCAATAAAAATACTGAAAAGAATATCCGAAATTTCCAC-AAT 54940 ||| | | | ||| ||| |||||||| ||||| | || ||| ||| || ||| Sbjct 1345 GAACAAATAGGAGTCATTTTTCTAAAAATATGGAAAATAG-ATTAGAACTTTTCATGAAT 1403 Query 54941 GCGATTATCTCTaaaaaaaT-TATTTTTACAAATAATGATTTCAGAGATATAAA-AGTGG 54998 | || |||||| || | || |||||| ||| |||||| ||| || | | | Sbjct 1404 GAAATGCATAATAAAAATATATCTTATTACAATGAAT-ATTTCACTGATTTAGACATTAT 1462 Query 54999 AAAAAATTAATAG-TGATACAA---TGGTCTATTGTGACCCACCATATTTAATTACTACT 55054 || || ||||| ||||| | | ||||||||||||||||||||| | || |||||| Sbjct 1463 CAACAA--AATAGATGATAAATCTTTAGTCTATTGTGACCCACCATATCTTATAACTACT 1520 Query 55055 GCTTCATACAATGA---AAATGGTGG---------CTGGACAGAAAAAGAAGAGATAGAT 55102 | || ||||| ||| | || ||||| |||||||||| | || Sbjct 1521 GGAAGTTATAATGATGGTAATAGAGGATTTAAGAATTGGACTAAAAAAGAAGAAGAAAAT 1580 Query 55103 TTATTGAATTTACTAGATGAATTAAATG-ATAAAAATATTAAATTCGCTTTATCAAATGT 55161 ||||| |||||| |||||||| | |||| | | ||| ||||| |||||||| ||||| Sbjct 1581 TTATTAAATTTATTAGATGAAATTAATGCAAATGGATA-CAAATTTGCTTTATCTAATGT 1639 Query 55162 CCTT 55165 ||| Sbjct 1640 ACTT 1643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 366441460140621