Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cylicostephanus_20goldi_20[genbank_20GCA_5F000951155.1_202014-10-12] 154,509 sequences; 173,362,437 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq3302 122 7e-22 seq16225 104 2e-16 >seq3302 Length=3241 Score = 122 bits (134), Expect = 7e-22 Identities = 141/189 (75%), Gaps = 6/189 (3%) Strand=Plus/Minus Query 550396 GGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGA 550455 ||| || || || ||||| || ||||| || || ||||| |||||||||||||||||||| Sbjct 2008 GGACGCTGTCATCACTGTCCCCGCATACTTCAACGACTCCCAACGTCAAGCTACTAAAGA 1949 Query 550456 TGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGC 550515 ||||||| || | ||| | ||||| ||||| || ||||| ||||| ||||| ||||| Sbjct 1948 TGCTGGAGCGATCTCAGGAATGAATGTACTTCGAATCATCAACGAACCCACTGCCGCTGC 1889 Query 550516 ACTTGCATATGGACTTGATAAACATAATGATCA---AGAACTTAATGTACTCATCTTTGA 550572 | || || ||||| || ||| || | || ||| | ||||| |||||||| || Sbjct 1888 TATCGCCTACGGACTCGACAAA---AAGGGACAAGGAGAGCGCAATGTCCTCATCTTCGA 1832 Query 550573 TTGTGGAGG 550581 | ||| || Sbjct 1831 TCTTGGTGG 1823 >seq16225 Length=1931 Score = 104 bits (114), Expect = 2e-16 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 550310 AAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCC 550369 || || ||| | || ||| |||| || | |||||| | | ||| ||||| ||| || Sbjct 1520 AAGCAGTTTGCTCCGGAAGAAATCTCTGCGATGGTTCTGACGAAGATGAAGGAAATTGCT 1579 Query 550370 AGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAAT 550429 | | | |||| | ||||| | | ||||||| | ||||| || || || || || Sbjct 1580 GAATCATATCTTGGAAAGGAAGTCAAGAATGCAGTTGTGACTGTGCCTGCTTACTTCAAC 1639 Query 550430 GACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGT 550489 ||| | || || || || || || ||||||||| || ||||| || |||||| |||| Sbjct 1640 GACGCTCAGCGACAGGCCACGAAGGATGCTGGAACAATCGCTGGTCTAAATGTTGTTCGA 1699 Query 550490 ATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTTGATAA 550536 || || ||||||||||| || || || |||| ||||| || || || Sbjct 1700 ATCATAAATGAACCTACAGCAGCAGCCATTGCTTATGGTCTCGACAA 1746 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4021124867244410