Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cylicostephanus_20goldi_20[genbank_20GCA_5F000951155.1_202014-10-12] 154,509 sequences; 173,362,437 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq7565 129 5e-25 seq67160 98.7 8e-16 >seq7565 Length=2537 Score = 129 bits (142), Expect = 5e-25 Identities = 164/226 (73%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 101244 CTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGA 101303 ||||||| | ||| | ||||| || ||||| || || || || ||||||||||||| | Sbjct 1 CTCCTCTAAGACGAAGGACTAAGTGGAGGGTCGACTCCTTCTGAATATTGTAATCGGACA 60 Query 101304 TAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAA 101363 || | |||| || | ||||| || ||||| ||||| ||||| || || || |||| Sbjct 61 ATGTGCGACCATCCTCGAGCTGCTTGCCGGCAAAAATCAATCGCTGCTGGTCTGGGGGAA 120 Query 101364 TGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTT 101423 | |||||||| ||||| || || || ||| |||| | || || || | ||||||| Sbjct 121 TTCCTTCTTTGTCTTGGATCTTCGCCTTCACATTTTCAATGGTATCTGAGGCCTCCACTT 180 Query 101424 CAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 | || || | ||| || || || || ||||| || || |||||||| Sbjct 181 CCAGGGTTATCGTCTTTCCCGTCAACGTTTTGACGAAAATCTGCAT 226 Score = 111 bits (122), Expect = 1e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 || ||| ||||| ||||| ||||| ||||| || ||||| || ||||| ||||| || || Sbjct 1679 CTCACCAGCAAAGATCAATCGCTGCTGATCTGGAGGAATTCCCTCTTTGTCTTGGATCTT 1738 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 || ||| |||| | |||||||| | ||| ||||| | |||| || |||||||| Sbjct 1739 GGCCTTCACATTTTCGATTGTGTCAGAAGCTTCGACTTCCAATGTGATAGTCTTGCCGGT 1798 Query 101446 TAAAGTTTTTACAAATATCTGCAT 101469 | |||||||||||| |||||||| Sbjct 1799 AAGAGTTTTTACAAAGATCTGCAT 1822 >seq67160 Length=966 Score = 98.7 bits (108), Expect = 8e-16 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 |||||| ||||| || | | ||| ||||| || || ||||||||||| ||||| || || Sbjct 598 CTTACCGGCAAAGATGAGTCTCTGCTGATCTGGTGGGATGCCTTCTTTGTCTTGGATCTT 539 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 | || ||| |||| | |||||| || | || |||||||| |||| || || || || Sbjct 538 TGCCTTGACATTTTCAATAGTGTCCGAAGCCTCGACTTCAAGCGTGATGGTCTTTCCAGT 479 Query 101446 TAAAGTTTTTACAAATATCTGCAT 101469 ||| || || ||||| || ||||| Sbjct 478 TAAGGTCTTGACAAAGATTTGCAT 455 Score = 86.0 bits (94), Expect = 5e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 101324 TGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATT 101383 ||||||||||| || || | || || ||||| || || ||||||||||| ||||||||| Sbjct 293 TGCTTACCTGCGAAGATAAGTCGTTGCTGATCTGGAGGGATGCCTTCTTTGTCTTGAATT 234 Query 101384 TTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCG 101443 || || ||| |||| | || ||||| | ||| ||||| ||||||| || || || Sbjct 233 TTAGCCTTGACATTTTCGATGGTATCAGAAGCTTCTACTTCCAGAGTGATGGTCTTCCCT 174 Query 101444 GT 101445 || Sbjct 173 GT 172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395532176689713