Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cylicostephanus_20goldi_20[genbank_20GCA_5F000951155.1_202014-10-12] 154,509 sequences; 173,362,437 total letters Query= NC_018843.1 Length=103299 Score E Sequences producing significant alignments: (Bits) Value seq41737 491 3e-134 seq31827 246 2e-60 >seq41737 Length=1265 Score = 491 bits (544), Expect = 3e-134 Identities = 303/331 (92%), Gaps = 0/331 (0%) Strand=Plus/Plus Query 54441 CTGAGCGCGAGTTCGCGCTGGTCAGCGAGCAGGTCGTGAAGATCATCGCTCGCGTCGCCA 54500 ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1 CTGAGCGTGAGTTCGCGCTGGTCAGTGAGCAGGTCGTGAAGATCATCGCTCGCGTCGCCA 60 Query 54501 AACACCTGAACCACGACGCAATCAAGTTTGACGAAGCCGCTGCTTCGAAGCGAATCAACG 54560 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 AACACCTGAACCACGACGCAATCAAGTTTGACGAAGCCGCTGCTTCGAAGCGAATCAACG 120 Query 54561 AATCAAAAGGAGCCTAATCATGGCAAAAGGCAAATCCGCACTGNNNNNNNNNNNNNNNNN 54620 ||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 AATCAAAAGGAGCCTAATCATGGCAAAAGGCAAATCCGCACTGGCACTGGCGCTGAAAAA 180 Query 54621 NNNNNTCGGCAGCAATGACGAGATCCAGAAGGTCTCCCACTGGATTGACTCCGGTTTCCC 54680 ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 181 GAAAATCGGCAGCAATGACGAGATTCAGAAGGTCTCCCACTGGATTGACTCCGGTTTCCC 240 Query 54681 TCCACTGAACAAAGCCATTTCCGGACGTTACGACGGTGGTTTTCCGTGTGGGCGTATCGT 54740 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 TCCACTGAACAAAGCCATTTCCGGACGTTACGACGGTGGTTTTCCGTGTGGGCGTATCGT 300 Query 54741 TGAAGTCTTCGGGCCGCCAAGCGCCGGTAAA 54771 ||||||||||||||| |||||||| || ||| Sbjct 301 TGAAGTCTTCGGGCCACCAAGCGCGGGGAAA 331 >seq31827 Length=1446 Score = 246 bits (272), Expect = 2e-60 Identities = 261/343 (76%), Gaps = 1/343 (0%) Strand=Plus/Minus Query 28324 CGCGCTGGCGTCGTTAAGCCGATCAAGACGGTTAAAGCGGTTCCTGTGACCAAAGAAACG 28383 || || ||| | || || ||| | ||| | || ||||| |||||||| || |||||||| Sbjct 1445 CGTGCCGGCATTGTCAAACCGGTAAAGGCTGTAAAAGCCGTTCCTGTAACAAAAGAAACC 1386 Query 28384 GCTGGCGCAACTGTCACGGCAGGTATTGGGCTGGCGCAGCTGGCCGACGTAATGCCCCAA 28443 | || || || ||||| ||||||||||| || || || | || ||||| ||||| ||| Sbjct 1385 ACAGGTGCTACAGTCACTGCAGGTATTGGCCTTGCACAAATTGCTGACGTTATGCCTCAA 1326 Query 28444 GTGTCTGTGGCGATGGATAAGGCACAAGGTCATATCACCAGCGGTGATACGGTTCGTATC 28503 || |||| || |||||||| || ||||| ||||| |||| || |||||||| || ||| Sbjct 1325 GTTTCTGCCGCAATGGATAAAGCGCAAGGCAATATCTCCAGTGGAGATACGGTACGCATC 1266 Query 28504 ATTTTTGGCGTAGCCACCATTATTGTGGCCGGCTTTATTGCCTGGTCTCAGGTACGCAAA 28563 || ||||||||||| |||||| ||||||| | || ||||||||||| ||||| ||||| Sbjct 1265 ATCTTTGGCGTAGCTACCATTCTTGTGGCAGCATTCATTGCCTGGTCCCAGGTTCGCAAG 1206 Query 28564 CACCAGAAAGGGATGGTTTAA-AATGTTCGGCAGCCTGGTTTCGAAGTTGAAAATTGCTC 28622 |||||||||| | || ||| ||||||||| ||||| | | || ||||| ||| Sbjct 1205 TACCAGAAAGGATTAGTGTAAGTATGTTCGGCGGCCTGTTGTTCAAAATGAAATCCGCTT 1146 Query 28623 TGATTACCCTGGCTGCCGTTCTTTTCGTGCTTGTCGGTGCTTA 28665 || | || ||||| ||||| || | || |||||||| || || Sbjct 1145 TGTTCACTCTGGCCGCCGTCATTCTAGTCCTTGTCGGCGCATA 1103 Score = 170 bits (188), Expect = 1e-37 Identities = 169/219 (77%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 28737 AAAGTACAGTGGACGTCAAAAATGAGACATTTAATGAAGTGCGGCGGAAAGGCGCTTCTG 28796 |||| |||||||| || |||||||| | |||| | || | ||||| ||||||| Sbjct 1035 AAAGCACAGTGGAAGTGGTGAATGAGACGAACAGTGAAATACGTCAGAAAGATGCTTCTG 976 Query 28797 CTGTTCATCGTGAGCTGCATGGTAAGTGGGTGCGTGATTAAGACACAGACTTCCGGCGTG 28856 | |||||||||||||||||| ||||||||||||| |||||| ||||||| || ||||| Sbjct 975 CCATTCATCGTGAGCTGCATGATAAGTGGGTGCGTAATTAAGCCACAGACCACCAGCGTG 916 Query 28857 CTCTTCTGCGATGCAGCCAACCCTATCTATGTGAGTAATGAGGATTTAATGACCGAAGAG 28916 | |||||||||| || | ||||| ||| | || ||||| ||| ||||||||||||| Sbjct 915 TTGTTCTGCGATGGCGCTGAACCTATTTATATCAGCAATGACGATGTAATGACCGAAGAA 856 Query 28917 ACAGAGCGGCAGATCTTGACTCACAATATGGTGGGCGAG 28955 || || || || ||| | |||||||| | |||| ||| Sbjct 855 ACCGAACGCCAAATCCTTTTTCACAATACGATGGGAGAG 817 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 329809770625740