Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cylicostephanus_20goldi_20[genbank_20GCA_5F000951155.1_202014-10-12] 154,509 sequences; 173,362,437 total letters Query= NC_019716.1 Length=44510 Score E Sequences producing significant alignments: (Bits) Value seq10918 560 3e-155 seq17020 342 1e-89 >seq10918 Length=2235 Score = 560 bits (620), Expect = 3e-155 Identities = 342/363 (94%), Gaps = 0/363 (0%) Strand=Plus/Minus Query 38837 TTTGTGCAGAAAGCATCACGACGAGCTGCATGCGGATACCGTGGCATTTGAAGAGAAGTA 38896 ||||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||| Sbjct 2235 TTTGTGCAGAAAGCATCACAACGAGCTGCATACGGATACAGTGGCATTTGAAGAGAAGTA 2176 Query 38897 TGGCTCCCAGCTGGAGCTGATATTTCGTTTTATCGATCGTGCGCTGGCAATTGGCGTATT 38956 ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| | Sbjct 2175 TGGCTCCCAACTGGAGCTGATATTTCGTTTTATCGATCGCGCGCTGGCAATTGGCGTACT 2116 Query 38957 GGCGTAAGTGGAGAACGAGCATGAACCTTGAAGCCTTACCAAAATATTACTCCCCAAAAT 39016 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2115 GGCGTAAGTGGAGAACGAGCATGAACCTTGAAGCCTTACCAAAATATTACTCCCCAAAAT 2056 Query 39017 CTCCAAAATTGAGCGATGACGCACCGGCGACAGGCTCAGGTGGTTTAACGATTACGGATG 39076 |||||||||||||||||||||| || ||||||||| | ||| ||||||| |||||||||| Sbjct 2055 CTCCAAAATTGAGCGATGACGCTCCAGCGACAGGCACCGGTTGTTTAACAATTACGGATG 1996 Query 39077 TGATGGCTGCGCAGGGGATGGTGCAGTCGAAAGCACCGCTTGGGTTTGCCTTATTCCTGG 39136 | ||||| ||||||||||||||||||||||||||||| |||||||| |||||||| |||| Sbjct 1995 TAATGGCAGCGCAGGGGATGGTGCAGTCGAAAGCACCACTTGGGTTGGCCTTATTTCTGG 1936 Query 39137 CAAAAGTTGGTGTTCAGGATCCTCAATTTGCGATTGAAGGTCTGCTCAATTACGCGATGG 39196 ||||||||||||||||||| ||||| |||||||||||||| ||||| ||||||||||||| Sbjct 1935 CAAAAGTTGGTGTTCAGGACCCTCAGTTTGCGATTGAAGGCCTGCTAAATTACGCGATGG 1876 Query 39197 CAC 39199 ||| Sbjct 1875 CAC 1873 Score = 502 bits (556), Expect = 7e-138 Identities = 365/422 (86%), Gaps = 2/422 (0%) Strand=Plus/Minus Query 39442 GAAGTCAGCACAGCGTGCAGAGGGTGTAAGGGTAAAGGTATTGTCCTGGATGAAAAAAGG 39501 |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| Sbjct 1717 GAAGTCAGCACAGCGTGCAGAGGGTGTAAGGGTAAAGGGATTGTTCTGGATGAAAAAAGA 1658 Query 39502 ACCCGGCTTCATGGCACGCCTGTTTATAAGATTTGTGGGCGTTGCAATGGAAACCGGTTT 39561 |||||| |||||||| || || |||||||||||||||||||| ||||||||||||||| Sbjct 1657 ACCCGGTTTCATGGCGTACCGGTATATAAGATTTGTGGGCGTTGTAATGGAAACCGGTTT 1598 Query 39562 AGCCGTTTACCAACCACACTGGCGCGGCATCATGTCCAGAAGCTGGTACCAGACCTGACG 39621 || |||||||| ||||| ||||| || | |||||||||||||||||||||||||||||| Sbjct 1597 AGTCGTTTACCGACCACGCTGGCACGACGTCATGTCCAGAAGCTGGTACCAGACCTGACC 1538 Query 39622 GATTATCAGTGGTACAAAGGATATGCAGATGTCATTGATAAACTGGTTACAAAGTGCTGG 39681 |||||||||||||| || || ||||| || ||||||| ||||||||| |||||||||||| Sbjct 1537 GATTATCAGTGGTATAAGGGGTATGCGGACGTCATTGGTAAACTGGTAACAAAGTGCTGG 1478 Query 39682 CAGGAAGAAGCATATGCAGAGATACAATTGAGAAAGGTGACAAGATAAATGGTTTTCGCC 39741 |||||||||||||| || || |||||||| |||||||| ||||||||| |||| || Sbjct 1477 CAGGAAGAAGCATACGCGGAAGCGCAATTGAGGAAGGTGACGAGATAAATGATTTTTGCT 1418 Query 39742 GAAGATGACGACATGATGCTTGCATTTTTCAAAAAATATGGATAAGATTTTCCCAACGAT 39801 ||||||| |||||||||| ||||||||||||||||| ||||||||||||||| ||||||| Sbjct 1417 GAAGATGGCGACATGATGTTTGCATTTTTCAAAAAACATGGATAAGATTTTCTCAACGAT 1358 Query 39802 GGGCTTTGTATGTCTACCGTT--GATAAGATTTAAGAACCCGCCCCTGAGCGGGtttttt 39859 ||||||||| | || |||| || || | | | ||||||| | ||||||||||| Sbjct 1357 GGGCTTTGTGTATCCGACGTTTAGAAAAAAGTAGAAAACCCGCTTATAAGCGGGTTTTTG 1298 Query 39860 tG 39861 || Sbjct 1297 TG 1296 >seq17020 Length=1896 Score = 342 bits (378), Expect = 1e-89 Identities = 209/221 (95%), Gaps = 1/221 (0%) Strand=Plus/Plus Query 27313 TTCTTTGGTAATAGTATTCATAACTATTTCACCTTAATCTCAACATTTCGCAGCTTTAGC 27372 |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| | Sbjct 1357 TTCTTTGGTAATAGAATTCATG-CTATTTCACCTTAATCTCAACATTTCGCAGCTTTAAC 1415 Query 27373 TCTACTGGCAGGTCTGACTTTCCTGTTAATGCTAATGCGAGATTTTCAGGAGTAATGAGA 27432 |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1416 TCTATTGGTAGGTCTGACTTTCCTGTTAATGCTAATGCGAGATTTTCAGGAGTAATGAGA 1475 Query 27433 GCAGTTATTGTTTTCCCCCTCGCCAGACGAATAATCATTCGTATCTCGCAATCGTCACAT 27492 ||||||||||||||| || ||||||||||||||||||||||||| |||| |||||||||| Sbjct 1476 GCAGTTATTGTTTTCTCCATCGCCAGACGAATAATCATTCGTATTTCGCGATCGTCACAT 1535 Query 27493 GCTCCCGGTCGAACAATTGAGATTTGTCCGTTCATCTCACT 27533 ||||| |||||||||||||| |||||||||||||||||||| Sbjct 1536 GCTCCTGGTCGAACAATTGATATTTGTCCGTTCATCTCACT 1576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 142049289678576