Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cylicostephanus_20goldi_20[genbank_20GCA_5F000951155.1_202014-10-12] 154,509 sequences; 173,362,437 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq16225 145 5e-29 seq7565 104 2e-16 seq120499 93.3 3e-13 seq14248 86.0 4e-11 >seq16225 Length=1931 Score = 145 bits (160), Expect = 5e-29 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 474647 AAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAAAATGAAACAAACCGCG 474706 || || ||| | |||||| |||| ||| | |||||| | | || ||||| ||| || Sbjct 1520 AAGCAGTTTGCTCCGGAAGAAATCTCTGCGATGGTTCTGACGAAGATGAAGGAAATTGCT 1579 Query 474707 AGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAAT 474766 |||||||||||| | ||||| | ||||||| | ||||| || || || || || Sbjct 1580 GAATCATATCTTGGAAAGGAAGTCAAGAATGCAGTTGTGACTGTGCCTGCTTACTTCAAC 1639 Query 474767 GATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGT 474826 || |||| || || || || || ||||| |||| ||| || ||||| |||||| | || Sbjct 1640 GACGCTCAGCGACAGGCCACGAAGGATGCTGGAACAATCGCTGGTCTAAATGTTGTTCGA 1699 Query 474827 ATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTTGATAAGAA 474876 || || |||||||| |||||||| || ||||||||||||| || ||||| Sbjct 1700 ATCATAAATGAACCTACAGCAGCAGCCATTGCTTATGGTCTCGACAAGAA 1749 >seq7565 Length=2537 Score = 104 bits (114), Expect = 2e-16 Identities = 112/146 (77%), Gaps = 2/146 (1%) Strand=Plus/Plus Query 480625 GTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAA 480684 ||| ||| ||||||||||| | |||||| ||||| ||||||||||||||||| || |||| Sbjct 669 GTTACTTACCAGCAAAAATCAAACGTTGCTGATCTGGAGGAATTCCTTCCTTATCCTGAA 728 Query 480685 TCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTA 480743 |||| ||| ||| |||||| ||||| | || | | || ||| || ||||| || Sbjct 729 TCTTGGCTTTCACATTTTCAATGGTATCGGATGCTTCGACTTCCAA-TGTGATAGTCTTG 787 Query 480744 CCGGTGAGAGTCTTAACGAAAATTTG 480769 || || |||||||| || || || || Sbjct 788 CCCGTAAGAGTCTTCACAAAGATCTG 813 Score = 93.3 bits (102), Expect = 3e-13 Identities = 105/138 (76%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692 || |||||||| || || || ||||| |||||||||||||||||||| || ||||| Sbjct 2018 CCTGCAAAAATGAGTCGCTGCTGATCTGGAGGAATTCCTTCCTTGTCCTGGATCTTAGCC 2077 Query 480693 TTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAG 480751 |||||| ||| || || || | || | | |||||| || ||||| || |||||||| Sbjct 2078 TTGACATTTTCGATTGTGTCGGATGCTTCGA-CTTCAAGTGTGATAGTCTTGCCGGTGAG 2136 Query 480752 AGTCTTAACGAAAATTTG 480769 || || |||||||| || Sbjct 2137 TGTTTTTACGAAAATCTG 2154 Score = 87.8 bits (96), Expect = 1e-11 Identities = 106/142 (75%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 480629 CTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTT 480688 ||| |||||||| || | || || ||||| ||||||||||||||||| || || ||||| Sbjct 1385 CTTACCAGCAAAGATCAATCGCTGCTGATCTGGAGGAATTCCTTCCTTATCCTGGATCTT 1444 Query 480689 TTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGG 480747 ||| ||| ||||| ||||| | || | || ||| ||||| || || || || | Sbjct 1445 AGCTTTCACATTCTCAATTGTATCGGATGCTTCAA-CTTCCAGGGTGATGGTCTTCCCAG 1503 Query 480748 TGAGAGTCTTAACGAAAATTTG 480769 | |||||||| ||||| || || Sbjct 1504 TCAGAGTCTTCACGAAGATCTG 1525 >seq120499 Length=638 Score = 93.3 bits (102), Expect = 3e-13 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 480629 CTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTT 480688 ||| |||||||| || | || || ||||| ||||||||||||||||||||||| ||||| Sbjct 292 CTTACCAGCAAAGATCAATCGCTGCTGATCTGGAGGAATTCCTTCCTTGTCTTGGATCTT 351 Query 480689 TTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGT 480748 ||||| || || || || | | |||||||||||| || || ||||| Sbjct 352 GGCCTTGACGTTCTCGATGGTGTCCGAAGCTTCGACTTCAAGGGTAATGGTCTTCCCGGT 411 Query 480749 GAGAGTCTTAACGAAAATTTG 480769 || ||||| ||||||||||| Sbjct 412 AAGGGTCTTCACGAAAATTTG 432 >seq14248 Length=2029 Score = 86.0 bits (94), Expect = 4e-11 Identities = 86/112 (77%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 355393 TTGAGTTGTGTGAAGATATATCGTGCACTTGCATTATCTTTGCCTCCACTTAATCTTGTA 355452 ||||| || ||||| ||||| || | | ||| | || || ||||| ||||| |||| Sbjct 618 TTGAGCTGCGTGAAAATATAACGAGGAGAGGCACTGTCCTTTCCTCCTTGTAATCGTGTA 677 Query 355453 CCAAATTGACCATTGGGAAGTAATAAATTTATGTTGTTACTTCCAACATAAT 355504 ||||| |||||| ||||||| | ||| ||||||||||| ||||||| ||| Sbjct 678 CCAAACTGACCAATGGGAAGCAGTAAGTTTATGTTGTTCGATCCAACAAAAT 729 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3261551559312332