Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cylicostephanus_20goldi_20[genbank_20GCA_5F000951155.1_202014-10-12] 154,509 sequences; 173,362,437 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq7565 113 8e-20 >seq7565 Length=2537 Score = 113 bits (124), Expect = 8e-20 Identities = 160/225 (71%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 171846 CCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAA 171905 |||||||| || | ||||| || | || | ||| || |||||| ||||| || || Sbjct 3 CCTCTAAGACGAAGGACTAAGTGGAGGGTCGACTCCTTCTGAATATTGTAATCGGACAAT 62 Query 171906 GATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATT 171965 | || | || || | || || || |||||||| |||| ||| ||||| || || ||| Sbjct 63 GTGCGACCATCCTCGAGCTGCTTGCCGGCAAAAATCAATCGCTGCTGGTCTGGGGGAATT 122 Query 171966 CCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCT 172025 |||||||| ||||| || || || ||||| || |||||||| | || ||||| Sbjct 123 CCTTCTTTGTCTTGGATCTTCGCCTTCACATTTTCAATGGTATCTGAGGCCTCCACTTCC 182 Query 172026 AGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || || || || || || || || ||||| | ||| ||||||||| Sbjct 183 AGGGTTATCGTCTTTCCCGTCAACGTTTTGACGAAAATCTGCATT 227 Score = 98.7 bits (108), Expect = 2e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 171927 TTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 171986 ||||||||||| || |||| ||| || || || || |||||||| ||||| || || ||| Sbjct 1386 TTACCAGCAAAGATCAATCGCTGCTGATCTGGAGGAATTCCTTCCTTATCCTGGATCTTA 1445 Query 171987 TTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 172046 ||| ||||| || ||||| || | ||| ||||| || || ||||| || ||||| Sbjct 1446 GCTTTCACATTCTCAATTGTATCGGATGCTTCAACTTCCAGGGTGATGGTCTTCCCAGTC 1505 Query 172047 AATGTTTTAATGAATATCTGCATT 172070 | || || | ||| ||||||||| Sbjct 1506 AGAGTCTTCACGAAGATCTGCATT 1529 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903387854272200