Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cylicostephanus_20goldi_20[genbank_20GCA_5F000951155.1_202014-10-12] 154,509 sequences; 173,362,437 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq7565 131 2e-25 seq120499 96.9 3e-15 seq67160 91.5 1e-13 seq91314 87.8 2e-12 >seq7565 Length=2537 Score = 131 bits (144), Expect = 2e-25 Identities = 158/212 (75%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | |||||| | || || || || || || || ||||| || ||| | Sbjct 226 ATGCAGATTTTCGTCAAAACGTTGACGGGAAAGACGATAACCCTGGAAGTGGAGGCCTCA 167 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | |||| || || ||||||||||||||||||||||| || || || || Sbjct 166 GATACCATTGAAAATGTGAAGGCGAAGATCCAAGACAAAGAAGGAATTCCCCCAGACCAG 107 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGAGAAACA-TGTCAGATTAT 24880 || || ||||| |||||||| || ||||| |||||| ||| ||| |||| ||||| Sbjct 106 CAGCGATTGATTTTTGCCGGCAAGCAGCTCGAGGATGGTCG---CACATTGTCCGATTAC 50 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGT 24912 || ||||| ||||| ||||| || ||||| || Sbjct 49 AATATTCAGAAGGAGTCGACCCTCCACTTAGT 18 Score = 118 bits (130), Expect = 1e-21 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | ||||| || ||||| || ||||| || | ||||| ||||| | Sbjct 1822 ATGCAGATCTTTGTAAAAACTCTTACCGGCAAGACTATCACATTGGAAGTCGAAGCTTCT 1763 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| | |||| || || ||||||||||||||||| ||||| ||||| ||||| Sbjct 1762 GACACAATCGAAAATGTGAAGGCCAAGATCCAAGACAAAGAGGGAATTCCTCCAGATCAG 1703 Query 24824 CAACGTTTGATCTTTGCCGG 24843 || || ||||||||||| || Sbjct 1702 CAGCGATTGATCTTTGCTGG 1683 Score = 104 bits (114), Expect = 2e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | |||||||| || || || || ||||| ||||| || || || || Sbjct 2462 ATGCAAATCTTCGTAAAAACGCTTACTGGAAAGACGATTACCCTCGAGGTTGAGGCTTCC 2403 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||| ||||||||||| || || ||||||||||| Sbjct 2402 GACACTATTGAGAATGTCAAGGCCAAGATTCAAGACAAAGAGGGCATTCCTCCCGATCAG 2343 Query 24824 CAACGTTTGATCTTTGCCGG 24843 |||||| |||||||||| || Sbjct 2342 CAACGTCTGATCTTTGCAGG 2323 Score = 100 bits (110), Expect = 3e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || ||||| || | ||||| ||||| || Sbjct 816 ATGCAGATCTTTGTGAAGACTCTTACGGGCAAGACTATCACATTGGAAGTCGAAGCATCC 757 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | |||| || ||| ||||| || || || |||||||| ||||| ||||| Sbjct 756 GATACCATTGAAAATGTGAAAGCCAAGATTCAGGATAAGGAAGGAATTCCTCCAGATCAG 697 Query 24824 CAACGTTTGATCTTTGCCGGGAA 24846 ||||||||||| ||||| || || Sbjct 696 CAACGTTTGATTTTTGCTGGTAA 674 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || || || ||||| ||||| || Sbjct 1528 ATGCAGATCTTCGTGAAGACTCTGACTGGGAAGACCATCACCCTGGAAGTTGAAGCATCC 1469 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || ||| | || | || ||| |||||||| || || |||||||| ||||| ||||| Sbjct 1468 GATACAATTGAGAATGTGAAAGCTAAGATCCAGGATAAGGAAGGAATTCCTCCAGATCAG 1409 Query 24824 CAACGTTTGATCTTTGCCGGGAA 24846 || || ||||||||||| || || Sbjct 1408 CAGCGATTGATCTTTGCTGGTAA 1386 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | || || || || || || || || || || ||||| ||||| || Sbjct 510 ATGCAAATCTTCGTCAAGACTCTTACTGGGAAGACCATCACCCTTGAAGTCGAAGCATCC 451 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| |||||||| ||||| ||||| Sbjct 450 GACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCTCCAGATCAG 391 Query 24824 CAACGTTTGATCTTTGCCGG 24843 || || ||||||||||| || Sbjct 390 CAGCGATTGATCTTTGCTGG 371 >seq120499 Length=638 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || | || || || ||||| || || ||||| || ||||| ||||| | Sbjct 435 ATGCAAATTTTCGTGAAGACCCTTACCGGGAAGACCATTACCCTTGAAGTCGAAGCTTCG 376 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||||||||| |||||||| ||||| ||||| Sbjct 375 GACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAAGGAATTCCTCCAGATCAG 316 Query 24824 CAACGTTTGATCTTTGCCGGGAA 24846 || || ||||||||||| || || Sbjct 315 CAGCGATTGATCTTTGCTGGTAA 293 >seq67160 Length=966 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| | || || |||| || || || || ||||| ||||| || || | Sbjct 455 ATGCAAATCTTTGTCAAGACCTTAACTGGAAAGACCATCACGCTTGAAGTCGAGGCTTCG 514 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || || ||||||||||||||||||||| || || || ||||| Sbjct 515 GACACTATTGAAAATGTCAAGGCAAAGATCCAAGACAAAGAAGGCATCCCACCAGATCAG 574 Query 24824 CAACGTTTGATCTTTGCCGGGAA 24846 || | | ||||||||||| || Sbjct 575 CAGAGACTCATCTTTGCCGGTAA 597 >seq91314 Length=789 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || || | ||||| ||||| || Sbjct 600 ATGCAGATCTTCGTGAAGACACTTACGGGCAAGACAATCACATTGGAAGTCGAAGCATCC 541 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | |||| || ||| |||||||| || || |||||||| || || ||||| Sbjct 540 GATACGATTGAAAATGTGAAAGCCAAGATCCAGGATAAGGAAGGAATTCCGCCAGATCAG 481 Query 24824 CAACGTTTGATCTTTGCCGGGAA 24846 || || ||||||||||| || || Sbjct 480 CAGCGATTGATCTTTGCTGGTAA 458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449028684646520