Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cylicostephanus_20goldi_20[genbank_20GCA_5F000951155.1_202014-10-12] 154,509 sequences; 173,362,437 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq7565 120 2e-22 seq67160 102 6e-17 >seq7565 Length=2537 Score = 120 bits (132), Expect = 2e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 29561 CTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCG-CA 29619 |||| || | ||| || || || || || || || || || ||||| || ||||| | || Sbjct 1 CTCCTCTAAGACGAAGGACTAAGTGGAGGGTCGACTCCTTCTGAATATTGTAATCGGACA 60 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 ||| ||||| ||| ||||| || ||||| ||| | ||||||| ||||| || || ||| Sbjct 61 ATG-TGCGACCATCCTCGAGCTGCTTGCCGGCAAAAATCAATCGCTGCTGGTCTGGGGGA 119 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || ||||||||||| | || || ||| |||| | || || || || ||| Sbjct 120 ATTCCTTCTTTGTCTTGGATCTTCGCCTTCACATTTTCAATGGTATCTGAGGCCTCCACT 179 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 || || ||||| || || || || || ||||| || || ||||||||| Sbjct 180 TCCAGGGTTATCGTCTTTCCCGTCAACGTTTTGACGAAAATCTGCATT 227 Score = 105 bits (116), Expect = 5e-18 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 29647 CCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT 29706 |||||| | ||||||| |||||||| || ||||| |||||||||||||| | || Sbjct 1683 CCAGCAAAGATCAATCGCTGCTGATCTGGAGGAATTCCCTCTTTGTCTTGGATCTTGGCC 1742 Query 29707 TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAG 29766 || ||| |||| | ||||||||| ||| ||||| | || ||||| ||||| || | Sbjct 1743 TTCACATTTTCGATTGTGTCAGAAGCTTCGACTTCCAATGTGATAGTCTTGCCGGTAAGA 1802 Query 29767 GTTTTAACAAATATCTGCATT 29787 ||||| ||||| ||||||||| Sbjct 1803 GTTTTTACAAAGATCTGCATT 1823 Score = 82.4 bits (90), Expect = 6e-11 Identities = 105/142 (74%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 29647 CCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG- 29705 || ||| | |||| | ||||||||| || ||||| |||||||||||||| ||| || | Sbjct 2323 CCTGCAAAGATCAGACGTTGCTGATCGGGAGGAATGCCCTCTTTGTCTTG-AATCTTGGC 2381 Query 29706 TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAA 29765 |||||| | || | |||||| ||| || || || || || || || || ||||| | Sbjct 2382 CTTGACATTCTCAATAGTGTCGGAAGCCTCAACCTCGAGGGTAATCGTCTTTCCAGTAAG 2441 Query 29766 GGTTTTAACAAATATCTGCATT 29787 ||||| || || || |||||| Sbjct 2442 CGTTTTTACGAAGATTTGCATT 2463 >seq67160 Length=966 Score = 102 bits (112), Expect = 6e-17 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 29644 TTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTT 29703 || || ||| | || | ||| |||||||| || || || || ||||||||||| | ||| Sbjct 597 TTACCGGCAAAGATGAGTCTCTGCTGATCTGGTGGGATGCCTTCTTTGTCTTGGATCTTT 538 Query 29704 TGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTT 29763 |||||| |||| | |||||| ||| || |||||||| || || || || |||||| Sbjct 537 GCCTTGACATTTTCAATAGTGTCCGAAGCCTCGACTTCAAGCGTGATGGTCTTTCCAGTT 478 Query 29764 AAGGTTTTAACAAATATCTGCATT 29787 ||||| || ||||| || |||||| Sbjct 477 AAGGTCTTGACAAAGATTTGCATT 454 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 384493802030769