Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cylicostephanus_20goldi_20[genbank_20GCA_5F000951155.1_202014-10-12] 154,509 sequences; 173,362,437 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq16754 351 7e-91 seq16225 116 3e-20 seq3302 96.9 3e-14 >seq16754 Length=1908 Score = 351 bits (388), Expect = 7e-91 Identities = 230/250 (92%), Gaps = 3/250 (1%) Strand=Plus/Plus Query 1168478 AATCTATGATGCCAGCATGATGTCGGTCTTAAAACGTGCACGCTGTTCTGTCGATAAGGC 1168537 |||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||| || Sbjct 1156 AATCTATGATGCTAGCATGATGTCGGTATTAAAACGTGCGCGCTGTTCTGTCGATAAAGC 1215 Query 1168538 CAACTTTGAATGTTCAATTGCTGGCGAATAATCTGATTTTTAAAGCAAAAAGCTTAGAGT 1168597 |||||||||||||||| || |||||||||||| |||||||||||| |||||||||||||| Sbjct 1216 CAACTTTGAATGTTCACTTTCTGGCGAATAATTTGATTTTTAAAGAAAAAAGCTTAGAGT 1275 Query 1168598 GATCTAGGCtttttttATGGCTGAACCAGGTCAGATCTGCCATTGTGCAGCGAATAAAAT 1168657 ||||| ||||||||||||| || | |||||||||||||||||||||||||||||||| Sbjct 1276 CATCTAAGCTTTTTTTATGGATG-CCTCGGTCAGATCTGCCATTGTGCAGCGAATAAAAT 1334 Query 1168658 AGCTTAAGCTTGAT-TAACTATTAAATTCGCATGTTTTATATAAAAAACA-TCACATGTG 1168715 |||||||||||||| ||| |||||||||| |||||||||||||||||||| ||||||||| Sbjct 1335 AGCTTAAGCTTGATCTAAATATTAAATTCACATGTTTTATATAAAAAACAGTCACATGTG 1394 Query 1168716 ACTAAAAGTG 1168725 ||||||| || Sbjct 1395 ACTAAAACTG 1404 >seq16225 Length=1931 Score = 116 bits (128), Expect = 3e-20 Identities = 337/521 (65%), Gaps = 57/521 (11%) Strand=Plus/Minus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 || || || |||||||| |||| || || || || |||||||| || |||| | |||| Sbjct 1749 TTCTTGTCGAGACCATAAGCAATGGCTGCTGCTGTAGGTTCATTTATGATTCGAACAACA 1690 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || |||||||| ||| |||| ||||| || ||||| |||| || | ||||| || || Sbjct 1689 TTTAGACCAGCGATTGTTCCAGCATCCTTCGTGGCCTGTCGCTGAGCGTCGTTGAAGTAA 1630 Query 282452 GCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGT 282511 ||||| ||||| | ||| |||| | ||||| ||||||| ||| | || ||| Sbjct 1629 GCAGGCACAGTCACAACTGCATTCTTGACTTCCTTTCCAAGATATGATTCAGCAATTTCC 1570 Query 282512 TTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATATTGCTTGGATTCATT- 282570 ||||| || | | || ||| | || |||| ||| |||| | | |||||| ||| || Sbjct 1569 TTCATCTTCGTCAGAACCATCGCAGAGATTTCTTCCGGAGCAAACTGCTTGTCTTCCTTG 1510 Query 282571 ------TTGAT------ATGATACTT------------------CAAAATATGGTTT--- 282597 || | ||| ||| | |||||||| || Sbjct 1509 CCAACTTTAACGACAACATGCGGCTTGTTGTTCTTGTCGGAGACCTAAATATGGGTTTAC 1450 Query 282598 ATTACCAACATT----AAT-----------AACTTTAAATGGCCAATATTTCATATCTGA 282642 | || || || ||| ||| || |||||||| || ||||| Sbjct 1449 AGAACTAAAATGGAAGAATTGCGACTGACAAACCTTGAATGGCCACAGCTTAATATCGTC 1390 Query 282643 TTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATT 282702 || ||| | | ||| || ||||| | |||||||||||| || |||||||||| || || Sbjct 1389 CTGTACAGTCTTGTCGTTGAAATCACGACCAATTAATCGCTTAGCATCAAAAACTGTGTT 1330 Query 282703 GGTTGGATTAACTG-CAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTC-----TGT 282756 ||||| | | ||| ||||| ||| || ||||| ||||||| | |||| | | Sbjct 1329 TTCAGGATTGATGGTCAG-TTGATTTTTTGCAGCATCACCAATCATACGTTCACCATTTT 1271 Query 282757 C-TCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCT 282796 | | || ||||| ||||||||| || || | ||||| ||| Sbjct 1270 CTTGTGAAAATGCAACATATGACGGGGTGATCCGATTTCCT 1230 >seq3302 Length=3241 Score = 96.9 bits (106), Expect = 3e-14 Identities = 193/284 (68%), Gaps = 4/284 (1%) Strand=Plus/Plus Query 282193 ATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCC 282252 ||| || ||||| ||||| | | || | ||| | || | | | |||| ||| | ||| Sbjct 1726 ATCGAAGTCTTCTCCTCCAAGATGGGTGTCTCCAGCGGTGGATTTGACTTCGAAGATTCC 1785 Query 282253 ATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTAC 282312 |||||| | | | | | ||||| ||| || ||||| | ||| || || || || Sbjct 1786 ATCTTCGATGGTTAGGATGGAGACATCGAAGGTACCGCCACCAAGATCGAAGATGAGGAC 1845 Query 282313 ATTCATTTCT--TTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGT 282370 ||| ||| ||||| ||||| || || || || || | |||||| ||||| ||| Sbjct 1846 ATTGCGCTCTCCTTGTCCC--TTTTTGTCGAGTCCGTAGGCGATAGCAGCGGCAGTGGGT 1903 Query 282371 TCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGT 282430 || || || |||| | ||||| | || | || ||| ||||||||||| ||||| Sbjct 1904 TCGTTGATGATTCGAAGTACATTCATTCCTGAGATCGCTCCAGCATCTTTAGTAGCTTGA 1963 Query 282431 CTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATC 282474 | ||| || ||||| || ||||| || ||||| || || || || Sbjct 1964 CGTTGGGAGTCGTTGAAGTATGCGGGGACAGTGATGACAGCGTC 2007 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3733044661055034