Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cylicostephanus_20goldi_20[genbank_20GCA_5F000951155.1_202014-10-12] 154,509 sequences; 173,362,437 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq7565 161 2e-34 seq91314 132 9e-26 seq67160 114 3e-20 seq120499 96.9 7e-15 >seq7565 Length=2537 Score = 161 bits (178), Expect = 2e-34 Identities = 174/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 82585 CTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATA 82644 ||||||| | ||| || |||||||| || || || || ||||| ||||| ||||| || | Sbjct 1 CTCCTCTAAGACGAAGGACTAAGTGGAGGGTCGACTCCTTCTGAATATTGTAATCGGACA 60 Query 82645 GAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTA 82704 | | ||| || || || || || || ||||| || | || || || ||||| || | Sbjct 61 ATGTGCGACCATCCTCGAGCTGCTTGCCGGCAAAAATCAATCGCTGCTGGTCTGGGGGAA 120 Query 82705 TTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGG-TTCTACT 82763 ||||||| || ||||| ||||| || || ||||||||||| ||||| | ||| || ||| Sbjct 121 TTCCTTCTTTGTCTTGGATCTTCGCCTTCACATTTTCAATGGTATC-TGAGGCCTCCACT 179 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 |||| ||||||||||| || |||||||| || || || ||||||||| Sbjct 180 TCCAGGGTTATCGTCTTTCCCGTCAACGTTTTGACGAAAATCTGCATT 227 Score = 138 bits (152), Expect = 2e-27 Identities = 117/144 (81%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || |||||||| || | | ||| ||||||||||| |||||||||||||| |||||||| Sbjct 674 TTACCAGCAAAAATCAAACGTTGCTGATCTGGAGGAATTCCTTCCTTATCCTGAATCTTG 733 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 ||||| ||||||||||| ||||| | ||| |||||||| || || |||||||| || Sbjct 734 GCTTTCACATTTTCAATGGTATCGGATGCTTCGACTTCCAATGTGATAGTCTTGCCCGTA 793 Query 82788 AACGTCTTTACAAATATCTGCATT 82811 | ||||| ||||| ||||||||| Sbjct 794 AGAGTCTTCACAAAGATCTGCATT 817 Score = 125 bits (138), Expect = 1e-23 Identities = 114/144 (79%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || ||||||||||| | || || ||||||||||| |||||||||||||| || ||||| Sbjct 1386 TTACCAGCAAAGATCAATCGCTGCTGATCTGGAGGAATTCCTTCCTTATCCTGGATCTTA 1445 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 ||||| ||||| ||||| ||||| | ||| ||||||| || || ||||| || ||| Sbjct 1446 GCTTTCACATTCTCAATTGTATCGGATGCTTCAACTTCCAGGGTGATGGTCTTCCCAGTC 1505 Query 82788 AACGTCTTTACAAATATCTGCATT 82811 | ||||| || || ||||||||| Sbjct 1506 AGAGTCTTCACGAAGATCTGCATT 1529 Score = 123 bits (136), Expect = 5e-23 Identities = 112/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 ||||||||||| | || || ||||||||||| ||||| || || ||||| ||||| || Sbjct 1683 CCAGCAAAGATCAATCGCTGCTGATCTGGAGGAATTCCCTCTTTGTCTTGGATCTTGGCC 1742 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || |||||||| || || ||| || ||| |||||||| || || |||||||| || | Sbjct 1743 TTCACATTTTCGATTGTGTCAGAAGCTTCGACTTCCAATGTGATAGTCTTGCCGGTAAGA 1802 Query 82791 GTCTTTACAAATATCTGCATT 82811 || |||||||| ||||||||| Sbjct 1803 GTTTTTACAAAGATCTGCATT 1823 Score = 102 bits (112), Expect = 2e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 || ||||| || |||| || ||||||||||| ||||||||||| || || ||||| || Sbjct 2018 CCTGCAAAAATGAGTCGCTGCTGATCTGGAGGAATTCCTTCCTTGTCCTGGATCTTAGCC 2077 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || |||||||| || || || | ||| ||||| | || || |||||||| || | Sbjct 2078 TTGACATTTTCGATTGTGTCGGATGCTTCGACTTCAAGTGTGATAGTCTTGCCGGTGAGT 2137 Query 82791 GTCTTTACAAATATCTGCATT 82811 || ||||| || ||||||||| Sbjct 2138 GTTTTTACGAAAATCTGCATT 2158 Score = 96.9 bits (106), Expect = 7e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 || |||||||| || | ||| ||||| ||||| || || || || ||||||||||| || Sbjct 2323 CCTGCAAAGATCAGACGTTGCTGATCGGGAGGAATGCCCTCTTTGTCTTGAATCTTGGCC 2382 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || ||||| ||||| || || || || || || | || |||||||| || || | | Sbjct 2383 TTGACATTCTCAATAGTGTCGGAAGCCTCAACCTCGAGGGTAATCGTCTTTCCAGTAAGC 2442 Query 82791 GTCTTTACAAATATCTGCATTAT 82813 || ||||| || || |||||||| Sbjct 2443 GTTTTTACGAAGATTTGCATTAT 2465 Score = 86.0 bits (94), Expect = 1e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 ||||||||||| | || || ||||||||||| ||||||||||| || || ||||| || Sbjct 371 CCAGCAAAGATCAATCGCTGCTGATCTGGAGGGATTCCTTCCTTGTCCTGGATCTTGGCC 430 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || || || || || || || | ||| ||||| | || || ||||| || || | Sbjct 431 TTGACGTTCTCGATGGTGTCGGATGCTTCGACTTCAAGGGTGATGGTCTTCCCAGTAAGA 490 Query 82791 GTCTTTACAAATATCTGCAT 82810 ||||| || || || ||||| Sbjct 491 GTCTTGACGAAGATTTGCAT 510 >seq91314 Length=789 Score = 132 bits (146), Expect = 9e-26 Identities = 115/143 (80%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || ||||||||||| | || || |||||||| || |||||||||||||| || ||||| Sbjct 458 TTACCAGCAAAGATCAATCGCTGCTGATCTGGCGGAATTCCTTCCTTATCCTGGATCTTG 517 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 ||||| ||||||||||||||||| | ||| |||||||| || || |||||||| || Sbjct 518 GCTTTCACATTTTCAATCGTATCGGATGCTTCGACTTCCAATGTGATTGTCTTGCCCGTA 577 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 | ||||| || || |||||||| Sbjct 578 AGTGTCTTCACGAAGATCTGCAT 600 Score = 104 bits (114), Expect = 5e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 |||||||| || | || || |||||||| || ||||||||||| || || ||||| || Sbjct 166 CCAGCAAAAATCAATCGCTGCTGATCTGGGGGGATTCCTTCCTTGTCCTGGATCTTAGCC 225 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || || || || || || ||| | ||| ||||||| || || ||||| || ||||| Sbjct 226 TTGACGTTCTCGATGGTGTCAGATGCTTCGACTTCCAGTGTGATGGTCTTCCCAGTCAAA 285 Query 82791 GTCTTTACAAATATCTGCAT 82810 ||||| ||||| |||||||| Sbjct 286 GTCTTCACAAAAATCTGCAT 305 >seq67160 Length=966 Score = 114 bits (126), Expect = 3e-20 Identities = 99/123 (80%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 82665 TGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATC 82724 || || || || ||||| |||| ||| ||||||||||| || ||||| || |||||||| Sbjct 293 TGCTTACCTGCGAAGATAAGTCGTTGCTGATCTGGAGGGATGCCTTCTTTGTCTTGAATT 234 Query 82725 TTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCT 82784 || || || |||||||| || |||||| || ||||||||||| ||| || ||||| ||| Sbjct 233 TTAGCCTTGACATTTTCGATGGTATCAGAAGCTTCTACTTCCAGAGTGATGGTCTTCCCT 174 Query 82785 GTC 82787 ||| Sbjct 173 GTC 171 Score = 111 bits (122), Expect = 3e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || || |||||||| ||||| || |||||||| || || ||||| || ||||| |||||| Sbjct 597 TTACCGGCAAAGATGAGTCTCTGCTGATCTGGTGGGATGCCTTCTTTGTCTTGGATCTTT 538 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || || ||||||||||| || || || || ||||| | || || ||||| || || Sbjct 537 GCCTTGACATTTTCAATAGTGTCCGAAGCCTCGACTTCAAGCGTGATGGTCTTTCCAGTT 478 Query 82788 AACGTCTTTACAAATATCTGCATT 82811 || ||||| ||||| || |||||| Sbjct 477 AAGGTCTTGACAAAGATTTGCATT 454 >seq120499 Length=638 Score = 96.9 bits (106), Expect = 7e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || ||||||||||| | || || ||||||||||| ||||||||||| ||||| ||||| Sbjct 293 TTACCAGCAAAGATCAATCGCTGCTGATCTGGAGGAATTCCTTCCTTGTCTTGGATCTTG 352 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || || || || || || || || || ||| ||||| | || || ||||| || || Sbjct 353 GCCTTGACGTTCTCGATGGTGTCCGAAGCTTCGACTTCAAGGGTAATGGTCTTCCCGGTA 412 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 | ||||| || || || ||||| Sbjct 413 AGGGTCTTCACGAAAATTTGCAT 435 Score = 87.8 bits (96), Expect = 4e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 82678 AGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACAT 82737 |||| | || ||| |||||||| || ||||||||||| || |||||||| || || || | Sbjct 1 AGATCAATCGTTGCTGATCTGGGGGAATTCCTTCCTTGTCCTGAATCTTGGCCTTGACGT 60 Query 82738 TTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTA 82797 | ||||| || || | ||| ||||| | ||| || ||||| || || | ||||| | Sbjct 61 TCTCAATGGTGTCGGATGCTTCGACTTCAAGAGTGATAGTCTTCCCGGTAAGGGTCTTGA 120 Query 82798 CAAATATCTGCAT 82810 | || || ||||| Sbjct 121 CGAAAATTTGCAT 133 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 979883529158551