Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cylicostephanus_20goldi_20[genbank_20GCA_5F000951155.1_202014-10-12] 154,509 sequences; 173,362,437 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq89190 95.1 2e-14 seq72481 84.2 3e-11 >seq89190 Length=803 Score = 95.1 bits (104), Expect = 2e-14 Identities = 114/153 (75%), Gaps = 3/153 (2%) Strand=Plus/Minus Query 69689 ACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTAT 69748 |||| | ||||| | ||||| ||||| ||||| || || | |||| || ||||| | Sbjct 304 ACTCAAAGATATCTGCGTGCCAAGGTTCGAGATAGATGGCAAAAGCTCCAGGACGTTTGT 245 Query 69749 TTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATAC 69808 |||| |||||||| | |||| ||||||||||| || || | ||||| |||| || | Sbjct 244 TTCCACCCTGATCCACATATCGAGCAGTGTTATTGTACACACGAAGCATAGGAACAAGCC 185 Query 69809 CATTAGATTTACCATTTGTTCCAGAAATATAAC 69841 |||||||| | ||||| || | |||| ||||| Sbjct 184 CATTAGATGTGCCATTAGT--CTGAAA-ATAAC 155 >seq72481 Length=921 Score = 84.2 bits (92), Expect = 3e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 70356 CTTGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAATAGCATAGTCAGGATGTTGTGT 70415 |||||| ||||| |||| ||||| | || || || || ||||| ||||||||||| || Sbjct 514 CTTGTGCAAATTCGATACAGCTATGCGAGCAGCAAGTATGGCATAATCAGGATGTTGGGT 573 Query 70416 AGTACAAGTAGCTGCTATTTCCGCAGCTAACGTATCTAATTCTATAGTTGTAACTCCGTT 70475 || | |||||| |||| || || || |||| || || | || || ||||| || Sbjct 574 GGTCATCGAAGCTGCGGTTTCTGCCGCCAAGTTATCCAACTCCACTGTGGTCACTCCTTT 633 Query 70476 ATATAGCCCTTGAATAACTTTCATGGCTA 70504 |||| ||| ||| |||||||| |||| Sbjct 634 GTATAATCCTCCAATGACTTTCATTGCTA 662 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 685582130102760