Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cylicostephanus_20goldi_20[genbank_20GCA_5F000951155.1_202014-10-12] 154,509 sequences; 173,362,437 total letters Query= NC_028660.1 Length=61035 Score E Sequences producing significant alignments: (Bits) Value seq17020 351 4e-92 >seq17020 Length=1896 Score = 351 bits (388), Expect = 4e-92 Identities = 225/244 (92%), Gaps = 1/244 (0%) Strand=Plus/Minus Query 27789 CTGGCATTCGCATCAAAGGAGAGTGAGATGAACGGACAAATCTCAATTGTTCGACCAGGA 27848 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1597 CTGGCATTCGCATCAAAGGAGAGTGAGATGAACGGACAAATATCAATTGTTCGACCAGGA 1538 Query 27849 GCATGTGACGATAGCGAGATACACATGATTATTCGTCTGGCGAGGGGGAAAACAATAACT 27908 |||||||||||| |||| |||| ||||||||||||||||||| || ||||||||||||| Sbjct 1537 GCATGTGACGATCGCGAAATACGAATGATTATTCGTCTGGCGATGGAGAAAACAATAACT 1478 Query 27909 GTTCTCACTACTCCAGAAAATCTCGCATTAGCATTAACAGGAAAGTCAGACCTGCCAGTA 27968 | ||||| |||||| |||||||||||||||||||||||||||||||||||||| ||| || Sbjct 1477 GCTCTCATTACTCCTGAAAATCTCGCATTAGCATTAACAGGAAAGTCAGACCTACCAATA 1418 Query 27969 GAGCTAAAGCTGCGAAATGTTGAGATTAAGGTGAAATAGCTATGACCACTTTTACCAAAG 28028 ||| |||||||||||||||||||||||||||||||||||| |||| || ||||||||| Sbjct 1417 GAGTTAAAGCTGCGAAATGTTGAGATTAAGGTGAAATAGC-ATGAATTCTATTACCAAAG 1359 Query 28029 ATCG 28032 | || Sbjct 1358 AACG 1355 Score = 125 bits (138), Expect = 3e-24 Identities = 100/117 (85%), Gaps = 4/117 (3%) Strand=Plus/Minus Query 34228 GGAGAA--ATGCAATGAAAGCAGCAAAAGGCGATGTTAATCACCCTGCTCATC-TCTGTA 34284 |||||| | || ||||| |||||||||||||||||||||| ||||| || || ||||| Sbjct 619 GGAGAAGCAGGCTATGAA-GCAGCAAAAGGCGATGTTAATCGCCCTGATCGTCATCTGTT 561 Query 34285 TTACCGTCATTGTGACGGCACTGATAACGAAGAAAGACCTCTGCAAGGGAGGAATCC 34341 | |||||||| |||||||||||| |||||| ||||||||||||| ||| | |||||| Sbjct 560 TAACCGTCATAGTGACGGCACTGGTAACGAGGAAAGACCTCTGCGAGGTACGAATCC 504 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 194832265752026