Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cylicostephanus_20goldi_20[genbank_20GCA_5F000951155.1_202014-10-12] 154,509 sequences; 173,362,437 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq7565 163 7e-35 seq132096 104 6e-17 seq91314 93.3 1e-13 seq67160 93.3 1e-13 seq120499 89.7 1e-12 >seq7565 Length=2537 Score = 163 bits (180), Expect = 7e-35 Identities = 164/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| | |||||| || || || || || | ||||||||||| ||| || | ||||| Sbjct 15 AGGACTAAGTGGAGGGTCGACTCCTTCTGAATATTGTAATCGGACAATGTGCGACCATCC 74 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || || || || | ||| || ||||| || ||||| ||||| |||||| Sbjct 75 TCGAGCTGCTTGCCGGCAAAAATCAATCGCTGCTGGTCTGGGGGAATTCCTTCTTTGTCT 134 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||||||| ||| ||||| ||||||| ||||| || | || |||||| Sbjct 135 TGGATCTTCGCCTTCACATTTTCAATGGTATCTGAGGCCTCCACTTCCAGGGTTATCGTC 194 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 || |||||||| ||||| | ||| | |||||| Sbjct 195 TTTCCCGTCAACGTTTTGACGAAAATCTGCATT 227 Score = 105 bits (116), Expect = 2e-17 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 ||||| ||||| | ||| || || || || ||||| || || |||||||||||||| | Sbjct 1683 CCAGCAAAGATCAATCGCTGCTGATCTGGAGGAATTCCCTCTTTGTCTTGGATCTTGGCC 1742 Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693 |||||| |||||| ||||| || | ||| || || || ||||| |||||||| || | | Sbjct 1743 TTCACATTTTCGATTGTGTCAGAAGCTTCGACTTCCAATGTGATAGTCTTGCCGGTAAGA 1802 Query 225694 GTTTTTATGAACACTTGCATT 225714 ||||||| || | |||||| Sbjct 1803 GTTTTTACAAAGATCTGCATT 1823 Score = 98.7 bits (108), Expect = 2e-15 Identities = 114/153 (75%), Gaps = 3/153 (2%) Strand=Plus/Plus Query 225565 AGCTGCTTC---CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 ||||||| | || || || || ||||| || || || || ||||| ||||||||||| Sbjct 2006 AGCTGCTACTAACCTGCAAAAATGAGTCGCTGCTGATCTGGAGGAATTCCTTCCTTGTCC 2065 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| ||| |||||| ||||| || | ||| || || | ||||| ||| Sbjct 2066 TGGATCTTAGCCTTGACATTTTCGATTGTGTCGGATGCTTCGACTTCAAGTGTGATAGTC 2125 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 ||||| || | ||||||| ||| | |||||| Sbjct 2126 TTGCCGGTGAGTGTTTTTACGAAAATCTGCATT 2158 Score = 86.0 bits (94), Expect = 1e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 ||||| ||||| | ||| || || || || || || ||||||||||| |||||||| | Sbjct 371 CCAGCAAAGATCAATCGCTGCTGATCTGGAGGGATTCCTTCCTTGTCCTGGATCTTGGCC 430 Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693 || || ||||||||||| || | ||| || || | ||||| ||||| || || | | Sbjct 431 TTGACGTTCTCGATGGTGTCGGATGCTTCGACTTCAAGGGTGATGGTCTTCCCAGTAAGA 490 Query 225694 GTTTTTATGAACACTTGCAT 225713 || || | ||| | |||||| Sbjct 491 GTCTTGACGAAGATTTGCAT 510 Score = 86.0 bits (94), Expect = 1e-11 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 ||| ||||| || || | ||||| || || || ||||| |||||||| || || ||||| Sbjct 673 CTTACCAGCAAAAATCAAACGTTGCTGATCTGGAGGAATTCCTTCCTTATCCTGAATCTT 732 Query 225630 TTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 |||||| ||| ||||| || || | ||| || || || ||||| ||||||||||| Sbjct 733 GGCTTTCACATTTTCAATGGTATCGGATGCTTCGACTTCCAATGTGATAGTCTTGCCCGT 792 Query 225690 CAAAGTTTTTATGAACACTTGCATT 225714 | ||| || | || | |||||| Sbjct 793 AAGAGTCTTCACAAAGATCTGCATT 817 >seq132096 Length=586 Score = 104 bits (114), Expect = 6e-17 Identities = 87/107 (81%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| || || ||||||||||| ||||| ||||| || |||||||| || || |||||||| Sbjct 471 GAAAATCTGTCCATCAGTAATGGAGATGACATTAGTGGGGATATACGCTGACACATCACC 530 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAA 4576 ||||| ||||| | ||| || || || || || ||||||||||||| Sbjct 531 AGCTTGAGTTTCAATAACTGGCAAAGCAGTCAGAGATCCACCACCAA 577 >seq91314 Length=789 Score = 93.3 bits (102), Expect = 1e-13 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 ||| ||||| ||||| | ||| || || || |||||||| |||||||| || |||||||| Sbjct 457 CTTACCAGCAAAGATCAATCGCTGCTGATCTGGCGGAATTCCTTCCTTATCCTGGATCTT 516 Query 225630 TTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 |||||| ||| || || || || | ||| || || || ||||| ||||||||||| Sbjct 517 GGCTTTCACATTTTCAATCGTATCGGATGCTTCGACTTCCAATGTGATTGTCTTGCCCGT 576 Query 225690 CAAAGTTTTTATGAACACTTGCAT 225713 | || || | ||| | ||||| Sbjct 577 AAGTGTCTTCACGAAGATCTGCAT 600 >seq67160 Length=966 Score = 93.3 bits (102), Expect = 1e-13 Identities = 95/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 225567 CTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGAT 225626 |||||| || ||||||||||||||||| || || || || || ||||| |||||||| || Sbjct 294 CTGCTTACCTGCGAAGATAAGTCGTTGCTGATCTGGAGGGATGCCTTCTTTGTCTTGAAT 235 Query 225627 CTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCC 225686 || ||| ||| ||||||||| || || | ||| || || | ||||| ||||| || Sbjct 234 TTTAGCCTTGACATTTTCGATGGTATCAGAAGCTTCTACTTCCAGAGTGATGGTCTTCCC 175 Query 225687 CGTC 225690 ||| Sbjct 174 TGTC 171 Score = 87.8 bits (96), Expect = 4e-12 Identities = 108/148 (73%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 225567 CTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGAT 225626 || ||| || || ||||| |||| || || || || || || ||||| ||||||||||| Sbjct 601 CTACTTACCGGCAAAGATGAGTCTCTGCTGATCTGGTGGGATGCCTTCTTTGTCTTGGAT 542 Query 225627 CTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCC 225686 |||| ||| ||| ||| || ||||| || | || || || | |||||| ||||| || Sbjct 541 CTTTGCCTTGACATTTTCAATAGTGTCCGAAGCCTCGACTTCAAGCGTGATGGTCTTTCC 482 Query 225687 CGTCAAAGTTTTTATGAACACTTGCATT 225714 || || || || | || | ||||||| Sbjct 481 AGTTAAGGTCTTGACAAAGATTTGCATT 454 >seq120499 Length=638 Score = 89.7 bits (98), Expect = 1e-12 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 ||| ||||| ||||| | ||| || || || || ||||| |||||||||||||||||||| Sbjct 292 CTTACCAGCAAAGATCAATCGCTGCTGATCTGGAGGAATTCCTTCCTTGTCTTGGATCTT 351 Query 225630 TTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 ||| || ||||||||||| || | ||| || || | || || ||||| || || Sbjct 352 GGCCTTGACGTTCTCGATGGTGTCCGAAGCTTCGACTTCAAGGGTAATGGTCTTCCCGGT 411 Query 225690 CAAAGTTTTTATGAACACTTGCAT 225713 | || || | ||| | |||||| Sbjct 412 AAGGGTCTTCACGAAAATTTGCAT 435 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1190170409709246