Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cylicostephanus_20goldi_20[genbank_20GCA_5F000951155.1_202014-10-12] 154,509 sequences; 173,362,437 total letters Query= NC_031129.1 Length=103445 Score E Sequences producing significant alignments: (Bits) Value seq134431 854 0.0 seq17020 178 9e-40 >seq134431 Length=576 Score = 854 bits (946), Expect = 0.0 Identities = 535/576 (93%), Gaps = 0/576 (0%) Strand=Plus/Minus Query 38256 GGATTCCTGCTATGTTCAGGCTGTCGCCTGAATCATTTCGGAGGGTTCCTGCTTCAACGG 38315 |||| ||||||| |||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 576 GGATCCCTGCTACGTTCAGGCTGTCGCCTGAATCATTTCGGTGGGTTCCTGCTTCAACGG 517 Query 38316 GCGGTCTGACTGCACCATCCCTCCACAGGCAAGCACGGCGTGCCCCGCCGCTAAAATGTT 38375 |||| |||||||||||||| ||||||||||||| |||||||||||||||||||||||||| Sbjct 516 GCGGCCTGACTGCACCATCTCTCCACAGGCAAGAACGGCGTGCCCCGCCGCTAAAATGTT 457 Query 38376 ACGAGCGCCGTTTACATCGGCGTTCGCTGTATATCCACAATCCCGACACACGAATTTACT 38435 ||||||||||||||||||||||||||||||||||||||| || | || ||||||||| Sbjct 456 ACGAGCGCCGTTTACATCGGCGTTCGCTGTATATCCACATACCTGGCATCTGAATTTACT 397 Query 38436 TTGTGACAGGCGGTTTTCTTTCGCTGTATGGCCACAGCACGCGCAACGCTGGCTTGTGTA 38495 ||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 396 TTGTGACAGACGATTTTCTTTCGCTGTATGACCACAGCACGCGCAACGCTGGCTTGTGTA 337 Query 38496 CGCTGGCGGCACTGCCAGTACCTGACCGCCACGCCAGAGCTGCTTGTACTCAAGCTGGCG 38555 ||||||||| || || || ||||||||||||| ||||||||||||||||||||||||||| Sbjct 336 CGCTGGCGGAACAGCAAGCACCTGACCGCCACTCCAGAGCTGCTTGTACTCAAGCTGGCG 277 Query 38556 GCGCATTTCATACCAGCCCTGATCCAGTATCGAACGGTTTAAACCTGATTTTGCCCGGAC 38615 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 276 GCGCATTTCATACCAGCCCTGATCCAGTATCGAACGGTTTAAACCTGATTTTGCCCGGAC 217 Query 38616 ATTGCGCCCCGGCTGACTTATCGTACCCGCCGCTGACTTTGACATGTATTTAACCTTCAA 38675 ||||||||||||||| || | ||||||||| |||||||||||||||| | |||||||| Sbjct 216 ATTGCGCCCCGGCTGGCTGACCGTACCCGCTGCTGACTTTGACATGTTGCTGACCTTCAA 157 Query 38676 ATCCTCAATGACAATCATTGCGTGGTTTTTGCTGATGATCGTTGTGATTTTATGAAGGTA 38735 |||||||||||| |||||||||||||||||||||| | ||||||||| ||| |||||||| Sbjct 156 ATCCTCAATGACTATCATTGCGTGGTTTTTGCTGACGGTCGTTGTGACTTTGTGAAGGTA 97 Query 38736 GTCTCTGCGGATGTTTGCGATACGAAAATGCAGTCGCTGTATTTTGCGTTTCTGCATCTG 38795 ||| |||||||| |||||||||| ||||||||||||||||||||||||||||| |||| Sbjct 96 GTCCCTGCGGATATTTGCGATACAGGAATGCAGTCGCTGTATTTTGCGTTTCTGCTTCTG 37 Query 38796 CCAGTTGTTGCTGAATCTGACCTTGCGGCTTAACTG 38831 |||||||||||||||| ||||||||||||||||||| Sbjct 36 CCAGTTGTTGCTGAATTTGACCTTGCGGCTTAACTG 1 >seq17020 Length=1896 Score = 178 bits (196), Expect = 9e-40 Identities = 116/127 (91%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 82558 TTTACTGCAACCGGTTCGGCTTCCAGTGATGCCAGCGCAATTCGTGCCAGTTCCATTTGT 82617 ||||| |||| || || |||||||| ||||||| ||||| |||||||||||||||||| Sbjct 1246 TTTAC--CAACTGGCTCTGCTTCCAGCAATGCCAGTGCAATCCGTGCCAGTTCCATTTGT 1303 Query 82618 TCGCCACGGGTAAGCCCGTTATCAAGCGGATTTTTAATGAATAATTCGATACGTTCTTTG 82677 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1304 TCGCCACGGGTAAGTCCGTTATCAAGCGGATTTTTAATGAATAATTCGATACGTTCTTTG 1363 Query 82678 GTTATAG 82684 || |||| Sbjct 1364 GTAATAG 1370 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 330276090851494