Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cylicostephanus_20goldi_20[genbank_20GCA_5F000951155.1_202014-10-12] 154,509 sequences; 173,362,437 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq7565 127 5e-24 seq120499 113 1e-19 seq67160 105 2e-17 seq91314 104 6e-17 >seq7565 Length=2537 Score = 127 bits (140), Expect = 5e-24 Identities = 148/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| ||||| | || ||||| ||||| ||||| || ||||| |||||| Sbjct 223 CAGATTTTCGTCAAAACGTTGACGGGAAAGACGATAACCCTGGAAGTGGAGGCCTCAGAT 164 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || || || ||||| || |||||||||||||| || || |||||||| Sbjct 163 ACCATTGAAAATGTGAAGGCGAAGATCCAAGACAAAGAAGGAATTCCCCCAGACCAGCAG 104 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | || || ||||| || |||||||| ||||| | || | ||||||| || | Sbjct 103 CGATTGATTTTTGCCGGCAAGCAGCTCGAGGATGGTCGCACATTGTCCGATTACAATATT 44 Query 178104 CAAAAAGAATCAACACTGCA 178123 || || || || || || || Sbjct 43 CAGAAGGAGTCGACCCTCCA 24 Score = 122 bits (134), Expect = 2e-22 Identities = 109/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || ||||| || || || || |||||||| || || ||| || ||| Sbjct 507 CAAATCTTCGTCAAGACTCTTACTGGGAAGACCATCACCCTTGAAGTCGAAGCATCCGAC 448 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||||||||| ||||| |||||||| |||||||||||||| || ||||| Sbjct 447 ACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCTCCAGATCAGCAG 388 Query 178044 CGACTTATCTTCGCCGG 178060 ||| | ||||| || || Sbjct 387 CGATTGATCTTTGCTGG 371 Score = 113 bits (124), Expect = 1e-19 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| ||||| || || ||||| ||||| ||||||||||| || || ||| Sbjct 2459 CAAATCTTCGTAAAAACGCTTACTGGAAAGACGATTACCCTCGAGGTTGAGGCTTCCGAC 2400 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| ||||| |||||||| |||||||| || || ||||| || |||||| Sbjct 2399 ACTATTGAGAATGTCAAGGCCAAGATTCAAGACAAAGAGGGCATTCCTCCCGATCAGCAA 2340 Query 178044 CGACTTATCTTCGCCGG 178060 || || ||||| || || Sbjct 2339 CGTCTGATCTTTGCAGG 2323 >seq120499 Length=638 Score = 113 bits (124), Expect = 1e-19 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||||||||| || || || || || || || ||||| || || ||| || ||| Sbjct 432 CAAATTTTCGTGAAGACCCTTACCGGGAAGACCATTACCCTTGAAGTCGAAGCTTCGGAC 373 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||||||||| ||||| || ||||| |||||||| ||||| || ||||| Sbjct 372 ACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAAGGAATTCCTCCAGATCAGCAG 313 Query 178044 CGACTTATCTTCGCCGGAAA 178063 ||| | ||||| || || || Sbjct 312 CGATTGATCTTTGCTGGTAA 293 Score = 109 bits (120), Expect = 1e-18 Identities = 102/130 (78%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || || || || || || || ||||| || || || ||| || ||| Sbjct 130 CAAATTTTCGTCAAGACCCTTACCGGGAAGACTATCACTCTTGAAGTCGAAGCATCCGAC 71 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||||||||| |||||||||||||| |||||||| || || || |||||| Sbjct 70 ACCATTGAGAACGTCAAGGCCAAGATTCAGGACAAGGAAGGAATTCCCCCAGATCAGCAA 11 Query 178044 CGACTTATCT 178053 ||| | |||| Sbjct 10 CGATTGATCT 1 >seq67160 Length=966 Score = 105 bits (116), Expect = 2e-17 Identities = 97/123 (79%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004 ||||| || || ||||| || || || ||| || || |||||||| || ||||| Sbjct 172 ACAGGGAAGACCATCACTCTGGAAGTAGAAGCTTCTGATACCATCGAAAATGTCAAGGCT 231 Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 || ||||| ||||||||||| |||||||| || |||||||||||||||||||| || || Sbjct 232 AAAATTCAAGACAAAGAAGGCATCCCTCCAGATCAGCAACGACTTATCTTCGCAGGTAAG 291 Query 178065 CAG 178067 ||| Sbjct 292 CAG 294 Score = 86.0 bits (94), Expect = 2e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || || | || ||||| || ||||| || || || || || ||| Sbjct 458 CAAATCTTTGTCAAGACCTTAACTGGAAAGACCATCACGCTTGAAGTCGAGGCTTCGGAC 517 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || ||||| |||||| || ||||||||||| ||||| || || ||||| Sbjct 518 ACTATTGAAAATGTCAAGGCAAAGATCCAAGACAAAGAAGGCATCCCACCAGATCAGCAG 577 Query 178044 CGACTTATCTTCGCCGGAAA 178063 |||| ||||| ||||| || Sbjct 578 AGACTCATCTTTGCCGGTAA 597 >seq91314 Length=789 Score = 104 bits (114), Expect = 6e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| ||||| ||| | || || || || ||||| || || || ||| || ||| Sbjct 302 CAGATTTTTGTGAAGACTTTGACTGGGAAGACCATCACACTGGAAGTCGAAGCATCTGAC 243 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||||||||| ||||| |||||||| ||||||||||| || || ||||| Sbjct 242 ACCATCGAGAACGTCAAGGCTAAGATCCAGGACAAGGAAGGAATCCCCCCAGATCAGCAG 183 Query 178044 CGACTTATCTTCGCCGG 178060 ||| | || || || || Sbjct 182 CGATTGATTTTTGCTGG 166 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1201348237667746