Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyocaulus_20viviparus_20[genbank_20GCA_5F000816705.1_202015-03- 12] 7,157 sequences; 160,963,781 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq9 91.5 2e-13 >seq9 Length=784367 Score = 91.5 bits (100), Expect = 2e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| |||||| | || ||||| || || || || || || ||||| ||||||| Sbjct 113092 ATGCAGATATTTGTGAAAACACTTACCGGGAAGACGATTACACTAGAGGTTGAAGCCTCC 113151 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || |||||| ||| | ||| |||||||||||||||||||| || ||||| |||||| Sbjct 113152 GACACAATTGAGAATGTGAAAGCAAAAATTCAAGATAAAGAAGGAATTCCACCGGATCAA 113211 Query 124659 CAAAGGCTTATTTTTGCAGGAAA 124681 || | | || ||||| || || Sbjct 113212 CAGCGCTTGATATTTGCTGGTAA 113234 Score = 91.5 bits (100), Expect = 2e-13 Identities = 109/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | || || ||||| || |||||||| ||| | || | ||||| Sbjct 113402 ATGCAAATTTTTGTCAAAACTCTAACTGGTAAAACTATCACTCTTGAAGTGGAAGCTTCA 113461 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| || |||| ||||||||||| |||||||| || ||||| ||||| Sbjct 113462 GACACGATTGAGAACGTAAAGGCAAAAATTCAAGACAAAGAAGGAATCCCACCAGATCAG 113521 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAAT 124686 || || | ||||||||||| || |||| Sbjct 113522 CAGAGATTGATTTTTGCAGGTAATCAAT 113549 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||||||| | ||||| |||||||| || || || || | || |||| || Sbjct 114473 ATGCAAATATTTGTGAAGACGCTAACAGGAAAGACGATCACGTTGGAAGTTGAGGCCTCA 114532 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | || |||||| |||||||| |||||||| ||||| || ||| Sbjct 114533 GACACTATTGAAAATGTGAAGACGAAAATACAAGATAAGGAAGGTATCCCACCAGACCAA 114592 Query 124659 CAAAGGCTTATTTTTGCAGG 124678 ||||| || ||||| || || Sbjct 114593 CAAAGACTAATTTTCGCGGG 114612 Score = 86.0 bits (94), Expect = 9e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | || || | || || |||||||| ||| | || | ||||| Sbjct 113698 ATGCAGATTTTTGTCAAAACCTTGACTGGTAAAACTATCACTCTTGAAGTGGAAGCTTCA 113757 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || |||||| ||| | ||| ||||||||||| |||||||| || ||||| |||||| Sbjct 113758 GACACAATTGAGAATGTGAAAGCAAAAATTCAAGACAAAGAAGGAATCCCACCAGATCAA 113817 Query 124659 CAAAGGCTTATTTTTGCAGG 124678 || |||| |||||||| || Sbjct 113818 CAGCGGCTAATTTTTGCTGG 113837 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755388415017600