Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyocaulus_20viviparus_20[genbank_20GCA_5F000816705.1_202015-03- 12] 7,157 sequences; 160,963,781 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq919 98.7 1e-15 seq100 84.2 3e-11 >seq919 Length=24097 Score = 98.7 bits (108), Expect = 1e-15 Identities = 114/154 (74%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 64023 GTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGGCATAATCCGGATGT 64082 |||| |||||||| ||| || | |||||||| || || |||||||||||||| ||||| Sbjct 19342 GTTTTCTTGTGTAAATTCGAAACAGCTATTCTAGCTGCAAGAATGGCATAATCAGGATGC 19283 Query 64083 TGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACT 64142 ||||| || | || || |||| ||||||| | |||||||| | |||| ||| Sbjct 19282 TGTGTGGTCATTGAAGCAGCGGTTTCAGCTGCCAAGTTATCCAATTCAGCAGTTGAAACT 19223 Query 64143 CCATTATATATTCCTTGAATAACCTTCATAGCTA 64176 || ||||||| || ||||| ||||| |||| Sbjct 19222 CCTTTATATAGACCGCCTATAACTTTCATTGCTA 19189 Score = 86.0 bits (94), Expect = 8e-12 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 62370 AGGAGATGCGGGTTAACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTA 62429 || || || ||||| || | ||| || || || || | ||||| | | || || || Sbjct 22285 AGCAGGTGTGGGTTTACAATTTGAAAATCACCCGAAAGCACTCTTCTGCTATATATGTTC 22226 Query 62430 CTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGC 62489 || |||||||| || || || ||||| ||||||||||| || ||||| ||||| ||| Sbjct 22225 GAAGTGTACGGTTCAACTGATTCGTTATTACCCAAAATTTGGGCTGTTGAAGCAGTTGGC 22166 Query 62490 ATAGGTGCCACCAATAAACTATTTCTAAGACC 62521 || || || ||||| ||||| || | || ||| Sbjct 22165 ATTGGGGCAACCAACAAACTGTTACGAATACC 22134 >seq100 Length=335030 Score = 84.2 bits (92), Expect = 3e-11 Identities = 97/130 (75%), Gaps = 3/130 (2%) Strand=Plus/Minus Query 33848 AACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTG 33907 || ||| || ||||| | ||| ||||| || |||||||| ||||||||||| || || Sbjct 309222 AATATATGTTTCGATAAGTTTACTGTACATCTCTGAATGAATATTTTCAATGGCGATTTG 309163 Query 33908 AAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCTGC--- 33964 ||| || |||||| | | |||||||| ||| || |||||| | | || || ||| | Sbjct 309162 AAAGCCATAGAAAAAACGAGCCTCGGGAATTTGAACTTCTTTCGAGAACCGCTCTACCTA 309103 Query 33965 TAAATTTTCA 33974 ||||||||| Sbjct 309102 CAAATTTTCA 309093 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629761254942960