Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyocaulus_20viviparus_20[genbank_20GCA_5F000816705.1_202015-03- 12] 7,157 sequences; 160,963,781 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq919 122 8e-23 >seq919 Length=24097 Score = 122 bits (134), Expect = 8e-23 Identities = 289/437 (66%), Gaps = 0/437 (0%) Strand=Plus/Minus Query 38113 TCGAATATATCAGCGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCA 38172 ||||| || || || |||||||| |||| |||||| | | ||||||||||||||| | Sbjct 20702 TCGAAAATGTCGGCATGCCATGGCTCTAAATAAATTGCAAATGCTCCTGGTCTTTTGTTT 20643 Query 38173 CCTCCCTGATTAATATATCTAACTGTGTTATTATATATTCTTAACATAGGTACTATACCA 38232 || || |||| || ||||| | | || || || |||| | | ||| || || | |||| Sbjct 20642 CCACCTTGATCAACATATCGAGCAGTATTGTTGTATACACGCAGCATTGGAACCAAACCA 20583 Query 38233 TTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGCTCGTATATTACTTATCGAC 38292 || || | || || ||||| || | | ||| |||| | || ||| | | Sbjct 20582 TTGGAAGTACCATTAGTACCGCCAATCAACGAACCAGTAGCCCTAATCTTATGCACATTC 20523 Query 38293 AATCCTATTCCACCTGCATGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAAATATA 38352 || || |||||||| ||| |||||| || ||||| || || |||| ||||||| |||| Sbjct 20522 AAGCCGATTCCACCGGCACTTTTTGAGATCAAAGCACACTGCTTTAGCGTATCATATATC 20463 Query 38353 CCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGA 38412 || | || || || | || | | | || || ||| | ||| ||| | Sbjct 20462 CCCGCAATGGAATCTTCACTCATAGTCAACAAGAAGCACGAAGAAAGTTGTGGCCAATTT 20403 Query 38413 GTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTA 38472 ||||| || || || | || || || ||||| |||| || ||| || ||| Sbjct 20402 GTTCCTGCATTGAACAGCGTTGGTGACGCATGAGTGAAATATCGTTCACTCATCAGATTG 20343 Query 38473 TATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGC 38532 || ||||| ||| | | || ||||| | || || || |||| | || | ||| ||| Sbjct 20342 TAGGTTTCAATTGCCGCGTCGATATCTTCACCATGGATGCCTATTGCAACACGCATGAGC 20283 Query 38533 ATATGTTGTGGTCTTTC 38549 ||||| ||||| | ||| Sbjct 20282 ATATGCTGTGGCCGTTC 20266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468482884600080