Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyocaulus_20viviparus_20[genbank_20GCA_5F000816705.1_202015-03- 12] 7,157 sequences; 160,963,781 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq919 102 1e-16 >seq919 Length=24097 Score = 102 bits (112), Expect = 1e-16 Identities = 115/154 (75%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 72778 GTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCTGGATGT 72837 |||| |||||||| ||| || || |||||||| || || |||||||||||||| ||||| Sbjct 19342 GTTTTCTTGTGTAAATTCGAAACAGCTATTCTAGCTGCAAGAATGGCATAATCAGGATGC 19283 Query 72838 TGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCAATTCTACCGTTGTTACT 72897 ||||| || | || || |||| ||||||| | |||||||| | |||| ||| Sbjct 19282 TGTGTGGTCATTGAAGCAGCGGTTTCAGCTGCCAAGTTATCCAATTCAGCAGTTGAAACT 19223 Query 72898 CCATTATATATTCCTTGGATAACCTTCATAGCTA 72931 || ||||||| || ||||| ||||| |||| Sbjct 19222 CCTTTATATAGACCGCCTATAACTTTCATTGCTA 19189 Score = 91.5 bits (100), Expect = 2e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 71125 AGGAGATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTA 71184 || || || || || || | |||||| || || || | ||||| | | || || || Sbjct 22285 AGCAGGTGTGGGTTTACAATTTGAAAATCACCCGAAAGCACTCTTCTGCTATATATGTTC 22226 Query 71185 CTGGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGC 71244 || |||||||| ||||| || ||||| ||||||||||| || ||||| ||||| ||| Sbjct 22225 GAAGTGTACGGTTCAACTGATTCGTTATTACCCAAAATTTGGGCTGTTGAAGCAGTTGGC 22166 Query 71245 ATAGGTGCCACCAATAGACTATTTCTAAGACCATG 71279 || || || ||||| | ||| || | || |||||| Sbjct 22165 ATTGGGGCAACCAACAAACTGTTACGAATACCATG 22131 Score = 84.2 bits (92), Expect = 3e-11 Identities = 106/143 (74%), Gaps = 2/143 (1%) Strand=Plus/Minus Query 71928 TTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATT 71987 ||||||||| | || | | |||| |||||||| || || | ||||||||||||||| Sbjct 20949 TTGTGTATA-AGTCCT-CAAACTTCTCTCCCCAGCAATCATCGAGTCCAGGACATTCATT 20892 Query 71988 CGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAAT 72047 ||||||||| || ||||||||| |||| | || || ||||| || || || || | Sbjct 20891 CGGACACATTAAGGACCACTCTAGGTCATGTTCAACCCGCTTCATGAAAAGGTCTGGCAC 20832 Query 72048 CCAAAGAGCTATAAATAGATCTC 72070 ||| | ||| ||| ||||||| Sbjct 20831 CCATAAAGCATAAAACAGATCTC 20809 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671079158209320