Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyocaulus_20viviparus_20[genbank_20GCA_5F000816705.1_202015-03- 12] 7,157 sequences; 160,963,781 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq9 141 2e-28 seq143 118 2e-21 >seq9 Length=784367 Score = 141 bits (156), Expect = 2e-28 Identities = 117/143 (82%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || |||||||| || | | ||||||||| || || |||||||||||||| ||||| ||| Sbjct 113234 TTACCAGCAAATATCAAGCGCTGTTGATCCGGTGGAATTCCTTCTTTATCTTGAATTTTT 113175 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 ||||| ||||| || | || ||| | ||| |||||||||||||| ||||| || ||| Sbjct 113174 GCTTTCACATTCTCAATTGTGTCGGAGGCTTCAACCTCTAGTGTAATCGTCTTCCCGGTA 113115 Query 104537 AGTGTTTTTACAAATATCTGCAT 104559 |||||||| |||||||||||||| Sbjct 113114 AGTGTTTTCACAAATATCTGCAT 113092 Score = 127 bits (140), Expect = 5e-24 Identities = 112/140 (80%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 |||||||||||||||| ||||||||| || || ||||||||||| || ||||| |||||| Sbjct 113837 CCAGCAAAAATTAGCCGCTGTTGATCTGGTGGGATTCCTTCTTTGTCTTGAATTTTTGCT 113778 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 || ||||| || | || || || ||| || || || || ||||| |||||||| | Sbjct 113777 TTCACATTCTCAATTGTGTCTGAAGCTTCCACTTCAAGAGTGATAGTTTTACCAGTCAAG 113718 Query 104540 GTTTTTACAAATATCTGCAT 104559 ||||| ||||| |||||||| Sbjct 113717 GTTTTGACAAAAATCTGCAT 113698 Score = 107 bits (118), Expect = 4e-18 Identities = 112/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 104413 TTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAAT 104472 ||| || || |||||||| | ||||| ||||| || || ||||||||||| || ||||| Sbjct 113548 TTGATTACCTGCAAAAATCAATCTCTGCTGATCTGGTGGGATTCCTTCTTTGTCTTGAAT 113489 Query 104473 CTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACC 104532 ||||| ||||| || || | || || || ||| || || || || ||||| ||||| Sbjct 113488 TTTTGCCTTTACGTTCTCAATCGTGTCTGAAGCTTCCACTTCAAGAGTGATAGTTTTACC 113429 Query 104533 AGTAAGTGTTTTTACAAATATCTGCAT 104559 ||| || ||||| ||||| || ||||| Sbjct 113428 AGTTAGAGTTTTGACAAAAATTTGCAT 113402 >seq143 Length=269893 Score = 118 bits (130), Expect = 2e-21 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 ||||||||||| || | |||||||| ||||| || ||||| |||||||||||||| ||| Sbjct 137292 CCAGCAAAAATAAGTCGTTGTTGATCTGGAGGAATACCTTCCTTATCCTGAATCTTGGCT 137233 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 || ||||| || | || ||| | ||| ||||||| || || ||||| ||||| || Sbjct 137232 TTCACATTCTCGATTGTGTCGGACGCTTCGACCTCTAAGGTGATTGTCTTGCCAGTGAGC 137173 Query 104540 GTTTTTACAAATATCTGCAT 104559 ||||| || || |||||||| Sbjct 137172 GTTTTCACGAAAATCTGCAT 137153 Score = 104 bits (114), Expect = 5e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 || || ||||| || | ||||||||||||||| || |||||||| || |||||||| ||| Sbjct 137614 CCTGCGAAAATGAGTCGCTGTTGATCAGGAGGAATGCCTTCTTTGTCTTGAATCTTGGCT 137555 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 || ||||| || | ||||| | ||| || || || || || ||||| || || || Sbjct 137554 TTCACATTCTCAATAGTATCAGACGCTTCGACTTCAAGCGTGATTGTCTTCCCTGTGAGA 137495 Query 104540 GTTTTTACAAATATCTGCAT 104559 || || ||||| |||||||| Sbjct 137494 GTCTTCACAAAGATCTGCAT 137475 Score = 102 bits (112), Expect = 2e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 |||||||| || || | ||| ||||||||||| |||||||| || || || ||||| || Sbjct 137941 CCAGCAAAGATAAGACGCTGCTGATCAGGAGGAATTCCTTCCTTGTCTTGGATCTTGGCC 137882 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 || || || || | |||||| | || ||||| ||||| || ||||| || || | | Sbjct 137881 TTAACGTTCTCGATGGTATCAGATGCCTCAACCTCCAGTGTGATCGTCTTCCCTGTTAAT 137822 Query 104540 GTTTTTACAAATATCTGCATT 104560 || || ||||| ||||||||| Sbjct 137821 GTCTTAACAAAAATCTGCATT 137801 Score = 95.1 bits (104), Expect = 3e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 ||||| || || || | || || || ||||| |||||||||||||| || ||||| || Sbjct 138258 CCAGCGAAGATCAGGCGTTGCTGGTCCGGAGGGATTCCTTCTTTATCTTGTATCTTAGCC 138199 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 ||||||||||| | || || | || |||||||| || || ||||| || || || Sbjct 138198 TTTACATTTTCAATCGTGTCAGATGCCTCCACCTCTAGGGTTATTGTCTTTCCTGTCAGC 138139 Query 104540 GTTTTTACAAATATCTGCAT 104559 || |||||||| || ||||| Sbjct 138138 GTCTTTACAAAAATTTGCAT 138119 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151292817846156