Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyocaulus_20viviparus_20[genbank_20GCA_5F000816705.1_202015-03- 12] 7,157 sequences; 160,963,781 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq9 102 7e-17 seq271 86.0 6e-12 seq143 86.0 6e-12 >seq9 Length=784367 Score = 102 bits (112), Expect = 7e-17 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 94872 CAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGA 94931 |||| || ||||| ||||||||||| || || ||||||||||| | |||||||||||| | Sbjct 113537 CAAAAATCAATCTCTGCTGATCTGGTGGGATTCCTTCTTTGTCTTGAATTTTTGCCTTTA 113478 Query 94932 CGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTT 94991 || | | ||||| | || || |||| ||||| ||||| ||||| ||||||| Sbjct 113477 CGTTCTCAATCGTGTCTGAAGCTTCCACTTCAAGAGTGATAGTTTTACCAGTTAGAGTTT 113418 Query 94992 TCACAAAGATCTGCAT 95007 | ||||| || ||||| Sbjct 113417 TGACAAAAATTTGCAT 113402 >seq271 Length=165737 Score = 86.0 bits (94), Expect = 6e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 94868 CCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCC 94927 ||| | ||||| || | ||| || ||||||||||| ||||| || || | || ||||| Sbjct 44782 CCGGCGAAGATCAACCGTTGTTGGTCTGGAGGAATGCCTTCCTTATCTTGGATCTTTGCT 44723 Query 94928 TTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGA 94987 || || | | ||||||| | || || |||| ||||| ||||||||||||||| Sbjct 44722 TTAACATTCTCAATGGTGTCAGAGGCCTCCACTTCAAGAGTGATAGTTTTTCCAGTAAGA 44663 Query 94988 GTTTTCACAAAGATCTGCAT 95007 || ||||| || || ||||| Sbjct 44662 GTCTTCACGAAAATTTGCAT 44643 >seq143 Length=269893 Score = 86.0 bits (94), Expect = 6e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 94872 CAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGA 94931 |||| || | || ||| |||||||||||||||||||| || || | ||| || || || | Sbjct 137288 CAAAAATAAGTCGTTGTTGATCTGGAGGAATACCTTCCTTATCCTGAATCTTGGCTTTCA 137229 Query 94932 CGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTT 94991 | ||| ||||| | ||||| || | ||||| || || ||||| || |||| Sbjct 137228 CATTCTCGATTGTGTCGGACGCTTCGACCTCTAAGGTGATTGTCTTGCCAGTGAGCGTTT 137169 Query 94992 TCACAAAGATCTGCATGCTT 95011 |||| || |||||||||||| Sbjct 137168 TCACGAAAATCTGCATGCTT 137149 Score = 86.0 bits (94), Expect = 6e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945 || ||||| |||||||| ||||||||||| | ||| || || || || | | ||| Sbjct 137596 TGTTGATCAGGAGGAATGCCTTCTTTGTCTTGAATCTTGGCTTTCACATTCTCAATAGTA 137537 Query 94946 TCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005 |||| ||||| |||| |||||| || || || || ||||| ||||||||||||||| Sbjct 137536 TCAGACGCTTCGACTTCAAGCGTGATTGTCTTCCCTGTGAGAGTCTTCACAAAGATCTGC 137477 Query 95006 AT 95007 || Sbjct 137476 AT 137475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448251094748520