Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyocaulus_20viviparus_20[genbank_20GCA_5F000816705.1_202015-03- 12] 7,157 sequences; 160,963,781 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq428 140 5e-29 seq169 127 3e-25 >seq428 Length=103070 Score = 140 bits (154), Expect = 5e-29 Identities = 172/235 (73%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 ||||||| |||||||| ||||||||||||||||| |||||||| || ||||||||||| | Sbjct 42876 GAGATAATATCCAAGGCATCACCAAGCCAGCTATTCGTCGTCTTGCACGTCGTGGTGGTG 42935 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | || || |||||||| | |||| ||||| | || | || | ||| | ||||| Sbjct 42936 TGAAACGCATCTCTGGACTTATCTACGAAGAAACCCGCGGAGTACTCAAGGTATTCCTTG 42995 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| || || | || ||| || ||| ||||| || || | || || ||||| Sbjct 42996 AGAATGTGATTCGCGACGCTGTCACATATTGTGAGCATGCAAAGAGAAAAACAGTCACAG 43055 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 ||||||| ||||||| || | ||||| ||||| |||| | | || ||||| || Sbjct 43056 CCATGGACGTCGTCTACGCTCTTAAACGGCAAGGACGTACGCTGTACGGTTTCGG 43110 Score = 129 bits (142), Expect = 9e-26 Identities = 173/237 (73%), Gaps = 4/237 (2%) Strand=Plus/Plus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| || |||||||| ||||||||||||||||| |||||||| || ||||||||||| | Sbjct 57748 GAGACAATATCCAAGGCATCACCAAGCCAGCTATTCGTCGTCTTGCACGTCGTGGTGGTG 57807 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | || || ||||||| | |||| ||||| | || | || | ||| | ||||| Sbjct 57808 TGAAACGCATCTCTGGTCTTATCTACGAAGAAACCCGAGGAGTACTCAAGGTATTCCTTG 57867 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATAC--CGAGCACGCTAAACGTAAGACTGTCAC 16635 ||| || || | || ||| | ||| |||| |||||||| || | ||||| ||||| Sbjct 57868 AGAATGTAATTCGCGACGCTGT-CAC-ATACTGTGAGCACGCGAAGAGGAAGACGGTCAC 57925 Query 16636 CTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 | ||||| ||||||| || | ||||| ||||| || | | |||||||| || Sbjct 57926 GGCTATGGACGTCGTCTACGCTCTTAAACGACAAGGGCGAACCCTGTATGGTTTCGG 57982 >seq169 Length=251353 Score = 127 bits (140), Expect = 3e-25 Identities = 187/263 (71%), Gaps = 4/263 (2%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 ||||| || || || | | || || || || || ||||| || || ||||| || || Sbjct 215674 GCTAAACGGCACCGAAAAGTACTACGGGACAATATTCAAGGTATTACTAAGCCGGCAATT 215615 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||| | || ||||||||||| || |||||| |||| ||| | | |||||||||| | Sbjct 215614 CGTCGTTTAGCCCGTCGTGGTGGTGTAAAGCGTATCTCGGGACTCATTTATGAAGAGACT 215555 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATAC--CG 16610 |||| ||| | || | ||||| | | || |||| |||||| | | |||| | Sbjct 215554 CGTGGAGTTCTCAAAGTGTTCCTTGAAAATGTAATCCGCGATGCTGT--AACATACTGTG 215497 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 | || || ||| | || || ||||| | |||||| | ||||||||| | || || |||| Sbjct 215496 AACATGCGAAAAGAAAAACCGTCACGGCTATGGATGTTGTCTATGCACTCAAGCGCCAAG 215437 Query 16671 GCCGTAAGATTTATGGTTTTGGA 16693 | |||| | ||||| |||||| Sbjct 215436 GACGTACATTATATGGATTTGGA 215414 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79068656304801