Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyocaulus_20viviparus_20[genbank_20GCA_5F000816705.1_202015-03- 12] 7,157 sequences; 160,963,781 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq919 143 7e-29 >seq919 Length=24097 Score = 143 bits (158), Expect = 7e-29 Identities = 302/443 (68%), Gaps = 8/443 (2%) Strand=Plus/Plus Query 363448 GAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGAT 363507 ||||| || ||||||||| | ||||||||||| || || |||||| | ||| | || Sbjct 20266 GAACGGCCACAGCATATGCTCATGCGTGTTGCAATAGGCATCCATGGTGAAGATATCGAC 20325 Query 363508 GCCGCGATTGAAACATATAAGCTTCTAAGTGCTCGTGTATTCACGCACGCCACGCCAACA 363567 || || |||||||| || || || | |||| || ||||| || || | ||||| Sbjct 20326 GCGGCAATTGAAACCTACAATCTGATGAGTGAACGATATTTCACTCATGCGTCACCAACG 20385 Query 363568 ATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAAG 363627 ||| |||||| ||||| | ||||| | ||||| ||||| | | | |||| Sbjct 20386 CTGTTCAATGCAGGAACAAATTGGCCACAACTTTCTTCGTGCTTCTTGTTGACTATGAGT 20445 Query 363628 GACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAAT 363687 || |||||||| | ||| || | ||| || || ||| | |||||| | || || || | | Sbjct 20446 GAAGATTCCATTGCGGGGATATATGATACGCTAAAGCAGTGTGCTTTGATCTCAAAAAGT 20505 Query 363688 GCAGGCGGAATTGG--TGTATCGATCCACAATGTTCGTGC-ACAGAACAGTTACATTCGC 363744 || || ||||| || || || | || || || | || || | ||| ||| || Sbjct 20506 GCCGGTGGAATCGGCTTGAAT--GTGCATAAGATTAGGGCTACTGGTTCGTT-GATTGGC 20562 Query 363745 GGCACAGGGGGATAC-TCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGC 363803 || || || ||| || ||||| ||||||| ||||| ||||| | |||||||||| Sbjct 20563 GGTACTAATGG-TACTTCCAATGGTTTGGTTCCAATGCTGCGTGTATACAACAATACTGC 20621 Query 363804 GAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCC 363863 | || || || || |||||| || | ||| || ||||| || ||| | ||||| Sbjct 20622 TCGATATGTTGATCAAGGTGGAAACAAAAGACCAGGAGCATTTGCAATTTATTTAGAGCC 20681 Query 363864 TCATCATGCCGATATTTTTGAGT 363886 |||||||| ||||| |||| Sbjct 20682 ATGGCATGCCGACATTTTCGAGT 20704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303234083696774