Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyocaulus_20viviparus_20[genbank_20GCA_5F000816705.1_202015-03- 12] 7,157 sequences; 160,963,781 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq1054 118 7e-22 seq599 114 9e-21 seq9 104 2e-17 seq211 93.3 3e-14 seq6682 89.7 3e-13 seq351 89.7 3e-13 >seq1054 Length=16975 Score = 118 bits (130), Expect = 7e-22 Identities = 88/103 (85%), Gaps = 5/103 (5%) Strand=Plus/Minus Query 25894 TTTATAATAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAG-----GGGGT 25948 ||| || |||||||||||||||||||||||||||||||||||||| ||| | || Sbjct 6809 TTTTTACCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGTTAGTGACAGTGGG 6750 Query 25949 AATCTCGTTAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||||||||||| ||||||||||||| || |||| |||||| Sbjct 6749 AATCTCGTTAATCCATTCATGCGCGTCAGTAGTTAGCTGACGA 6707 >seq599 Length=66701 Score = 114 bits (126), Expect = 9e-21 Identities = 87/103 (84%), Gaps = 5/103 (5%) Strand=Plus/Plus Query 25894 TTTATAATAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGT 25948 ||| || |||||||||||||||||||||||||||||||||||||| | ||| || Sbjct 23440 TTTTTACCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGTTCGGGACAGTGGG 23499 Query 25949 AATCTCGTTAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||||||||||| || |||||||||| || |||| |||||| Sbjct 23500 AATCTCGTTAATCCATTGATGCGCGTCAGTAGTTAGCTGACGA 23542 Score = 114 bits (126), Expect = 9e-21 Identities = 87/103 (84%), Gaps = 5/103 (5%) Strand=Plus/Minus Query 25894 TTTATAATAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGT 25948 ||| || |||||||||||||||||||||||||||||||||||||| | ||| || Sbjct 25227 TTTTTACCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGTTCGGGACAGTGGG 25168 Query 25949 AATCTCGTTAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||||||||||| || |||||||||| || |||| |||||| Sbjct 25167 AATCTCGTTAATCCATTGATGCGCGTCAGTAGTTAGCTGACGA 25125 >seq9 Length=784367 Score = 104 bits (114), Expect = 2e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 38178 CCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGC 38237 || ||||| ||||| || |||||||| | |||| ||||||||||| ||||||| Sbjct 113837 CCAGCAAAAATTAGCCGCTGTTGATCTGGTGGGATTCCTTCTTTGTCTTGAATTTTTGCT 113778 Query 38238 TTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAG 38297 |||||||||| | || ||| | ||| ||||| | || ||||||||||| |||||| Sbjct 113777 TTCACATTCTCAATTGTGTCTGAAGCTTCCACTTCAAGAGTGATAGTTTTACCAGTCAAG 113718 Query 38298 GTTTTCACGAATATCTGCAT 38317 ||||| || || |||||||| Sbjct 113717 GTTTTGACAAAAATCTGCAT 113698 Score = 84.2 bits (92), Expect = 1e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 38175 TTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTT 38234 || || |||||||| | ||| |||||||| | || | |||||||| || ||||||| Sbjct 113234 TTACCAGCAAATATCAAGCGCTGTTGATCCGGTGGAATTCCTTCTTTATCTTGAATTTTT 113175 Query 38235 TGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTC 38294 |||||||||| | || || |||||| |||| |||||| || || || || Sbjct 113174 GCTTTCACATTCTCAATTGTGTCGGAGGCTTCAACCTCTAGTGTAATCGTCTTCCCGGTA 113115 Query 38295 AAGGTTTTCACGAATATCTGCATG 38318 | |||||||| |||||||||||| Sbjct 113114 AGTGTTTTCACAAATATCTGCATG 113091 >seq211 Length=231949 Score = 93.3 bits (102), Expect = 3e-14 Identities = 68/78 (87%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGC-TATCGGTCTCG 20005 |||||||||||||||||||| ||||||||| |||| ||||||||| || ||||| ||| Sbjct 231862 CTCTCTCTTCAAAGTTCTTTGCAACTTTCCTTCACAGTACTTGTTTGCTTATCGAATTCG 231921 Query 20006 CGGTAATATTTAGCCTTA 20023 || |||||||||||||| Sbjct 231922 CGTCAATATTTAGCCTTA 231939 >seq6682 Length=1039 Score = 89.7 bits (98), Expect = 3e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||| ||||||||| |||| ||||||||| |||||| |||| Sbjct 808 CTCTCTCTTCAAAGTTCTTTGCAACTTTCCTTCACAGTACTTGTTTGCTATCAAATTCGC 749 Query 20007 GGTAATATTTAGCCTTA 20023 | ||||||||| |||| Sbjct 748 GTCAATATTTAGTCTTA 732 >seq351 Length=124363 Score = 89.7 bits (98), Expect = 3e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||| ||||||| | |||| |||||||| ||||||| |||| Sbjct 124012 CTCTCTCTTCAAAGTTCTTTGCAACTTTTCTTCACAGTACTTGTATGCTATCGAATTCGC 123953 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||||| Sbjct 123952 GTCAATATTTAGCCTTA 123936 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334917983916467