Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyocaulus_20viviparus_20[genbank_20GCA_5F000816705.1_202015-03- 12] 7,157 sequences; 160,963,781 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq919 98.7 1e-15 seq100 87.8 2e-12 >seq919 Length=24097 Score = 98.7 bits (108), Expect = 1e-15 Identities = 114/154 (74%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 63827 GTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCCGGATGT 63886 |||| ||||||| ||| || || ||||||||||| || |||||||||||||| ||||| Sbjct 19342 GTTTTCTTGTGTAAATTCGAAACAGCTATTCTAGCTGCAAGAATGGCATAATCAGGATGC 19283 Query 63887 TGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACA 63946 ||||| || | || || |||| ||||||| | |||||||| | |||| || Sbjct 19282 TGTGTGGTCATTGAAGCAGCGGTTTCAGCTGCCAAGTTATCCAATTCAGCAGTTGAAACT 19223 Query 63947 CCATTATATATTCCTTGGATAACCTTCATAGCTA 63980 || ||||||| || ||||| ||||| |||| Sbjct 19222 CCTTTATATAGACCGCCTATAACTTTCATTGCTA 19189 Score = 86.0 bits (94), Expect = 8e-12 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 62993 TCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGAC 63052 || |||| |||||||| || || |||||||||||||||| ||||||||| || ||| Sbjct 20935 TCAAACTTCTCTCCCCAGCAATCATCGAGTCCAGGACATTCATTCGGACACATTAAGGAC 20876 Query 63053 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 63112 |||||| ||||| | || || ||||| || || || || | ||| | ||| ||| Sbjct 20875 CACTCTAGGTCATGTTCAACCCGCTTCATGAAAAGGTCTGGCACCCATAAAGCATAAAAC 20816 Query 63113 AGATCTC 63119 ||||||| Sbjct 20815 AGATCTC 20809 Score = 86.0 bits (94), Expect = 8e-12 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 62174 AGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTA 62233 || || || || || || | |||||| || || || | ||||| | | || || || Sbjct 22285 AGCAGGTGTGGGTTTACAATTTGAAAATCACCCGAAAGCACTCTTCTGCTATATATGTTC 22226 Query 62234 CTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGC 62293 || |||||||| || || || ||||| ||||||||||| || ||||| ||||| ||| Sbjct 22225 GAAGTGTACGGTTCAACTGATTCGTTATTACCCAAAATTTGGGCTGTTGAAGCAGTTGGC 22166 Query 62294 ATAGGTGCCACCAATAAACTATTTCTAAGACC 62325 || || || ||||| ||||| || | || ||| Sbjct 22165 ATTGGGGCAACCAACAAACTGTTACGAATACC 22134 >seq100 Length=335030 Score = 87.8 bits (96), Expect = 2e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 33148 TAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCC 33207 |||| |||| || ||||||||||||||||| ||||| | || || || || | || Sbjct 308865 TAGAAATATAAACCTCTTCCACTGTCCAAAAAGATGCAACAGCTTTCTTGTAAAACGCCC 308806 Query 33208 AGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGATTTT 33255 | ||||||||||||| | |||||||| ||||||| ||| ||||||| Sbjct 308805 ATATGTCATGATATTTCAGGGGAAAAATCACAAATCGATTGGGATTTT 308758 Score = 84.2 bits (92), Expect = 3e-11 Identities = 97/130 (75%), Gaps = 3/130 (2%) Strand=Plus/Minus Query 32927 AACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTG 32986 || |||||| || || | ||| ||||| || |||||||| ||||||||||| ||||| Sbjct 309222 AATATATGTTTCGATAAGTTTACTGTACATCTCTGAATGAATATTTTCAATGGCGATTTG 309163 Query 32987 AAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGC--- 33043 ||| || ||||| | | |||||||| ||| || |||||| | | || || ||| | Sbjct 309162 AAAGCCATAGAAAAAACGAGCCTCGGGAATTTGAACTTCTTTCGAGAACCGCTCTACCTA 309103 Query 33044 TAAATTTTCA 33053 ||||||||| Sbjct 309102 CAAATTTTCA 309093 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633575313697200